Variant report

Variant	rs17250804
Chromosome Location	chr7:25468916-25468917
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1004709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1012152	0.88[EUR][1000 genomes]
rs17309270	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17310037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2158901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62452191	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62452194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62452195	0.82[AMR][1000 genomes]
rs62452196	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62452197	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62452224	1.00[AFR][1000 genomes]
rs62455275	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62455276	0.88[EUR][1000 genomes]
rs62455283	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62455284	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62455285	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62455289	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6961837	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808635	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
4	nsv887847	chr7:25463604-25482619	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25464600-25472000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:25464800-25469400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:25465000-25469400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr7:25467800-25469600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:25468000-25470800	Enhancers	Adipose Nuclei	Adipose
6	chr7:25468200-25469600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr7:25468400-25469000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:25468400-25469400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:25468600-25469200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:25468600-25469200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:25468800-25469000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:25468800-25469200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:25468800-25469400	Enhancers	Osteobl	bone
14	chr7:25468800-25469600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr7:25468800-25469600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:25468800-25470200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:25468800-25470400	Enhancers	Ovary	ovary
18	chr7:25468800-25470400	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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