Variant report

Variant	rs62452224
Chromosome Location	chr7:25494452-25494453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1004709	1.00[AFR][1000 genomes]
rs17250804	1.00[AFR][1000 genomes]
rs17310037	1.00[AFR][1000 genomes]
rs2158901	1.00[AFR][1000 genomes]
rs57422184	1.00[ASN][1000 genomes]
rs62452191	1.00[AFR][1000 genomes]
rs62452194	1.00[AFR][1000 genomes]
rs62452196	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62452197	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62455275	1.00[AFR][1000 genomes]
rs62455289	1.00[AFR][1000 genomes]
rs6961837	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
4	nsv1033664	chr7:25471881-25503391	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1033757	chr7:25472222-25504421	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25493400-25495000	Enhancers	Fetal Muscle Leg	muscle
2	chr7:25493400-25497000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:25493400-25497000	Enhancers	Fetal Lung	lung
4	chr7:25493600-25497000	Enhancers	Adipose Nuclei	Adipose
5	chr7:25493800-25494800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:25493800-25495000	Enhancers	Psoas Muscle	Psoas
7	chr7:25494000-25495000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr7:25494000-25495200	Enhancers	Fetal Stomach	stomach
9	chr7:25494000-25495800	Enhancers	Placenta	Placenta
10	chr7:25494200-25494600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr7:25494200-25494600	Active TSS	Monocytes-CD14+_RO01746	blood
12	chr7:25494200-25494800	Flanking Active TSS	Osteobl	bone
13	chr7:25494200-25495000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr7:25494200-25496800	Enhancers	Lung	lung
15	chr7:25494200-25497000	Enhancers	Colon Smooth Muscle	Colon
16	chr7:25494400-25494600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr7:25494400-25494600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:25494400-25494600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:25494400-25494600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:25494400-25494600	Bivalent Enhancer	Fetal Intestine Small	intestine
21	chr7:25494400-25494600	Flanking Active TSS	Stomach Smooth Muscle	stomach
22	chr7:25494400-25494800	Active TSS	Rectal Mucosa Donor 29	rectum
23	chr7:25494400-25494800	Bivalent/Poised TSS	A549	lung
24	chr7:25494400-25495000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr7:25494400-25495000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr7:25494400-25495000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr7:25494400-25495000	Enhancers	Fetal Kidney	kidney
28	chr7:25494400-25495400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr7:25494400-25497200	Enhancers	Ovary	ovary

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