The 2.0 version of rSNPBase

Variant report

Variant rs1725477
Chromosome Location chr19:38464412-38464413
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:38457200-38470400 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr19:38457600-38470200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr19:38457600-38470400 Weak transcription H1 Cell Line embryonic stem cell
4 chr19:38457600-38470400 Weak transcription HUES48 Cell Line embryonic stem cell
5 chr19:38457800-38468200 Weak transcription Muscle Satellite Cultured Cells --
6 chr19:38457800-38468400 Weak transcription NH-A brain
7 chr19:38458200-38468600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
8 chr19:38459000-38464800 ZNF genes & repeats A549 lung
9 chr19:38460600-38468200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr19:38461000-38468200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr19:38461200-38468200 Weak transcription Breast Myoepithelial Primary Cells Breast
12 chr19:38461400-38465800 Weak transcription HepG2 liver
13 chr19:38461600-38465200 Weak transcription Lung lung
14 chr19:38461600-38466800 Weak transcription Left Ventricle heart
15 chr19:38461600-38468200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
16 chr19:38461600-38468400 Weak transcription Brain Cingulate Gyrus brain
17 chr19:38461600-38468400 Weak transcription Osteobl bone
18 chr19:38461600-38468600 Weak transcription Pancreas Pancrea
19 chr19:38461600-38470200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
20 chr19:38461600-38470200 Weak transcription Rectal Mucosa Donor 29 rectum
21 chr19:38461600-38470200 Weak transcription Rectal Mucosa Donor 31 rectum
22 chr19:38461600-38470200 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr19:38461600-38470400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
24 chr19:38461600-38470400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
25 chr19:38461600-38470400 Weak transcription Gastric stomach
26 chr19:38461600-38472000 Weak transcription NHDF-Ad bronchial
27 chr19:38461600-38476600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr19:38461600-38493600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
29 chr19:38461600-38493600 Weak transcription Stomach Smooth Muscle stomach
30 chr19:38461800-38470600 Weak transcription Skeletal Muscle Male skeletal muscle
31 chr19:38461800-38476800 Weak transcription H9 Cell Line embryonic stem cell
32 chr19:38462000-38464600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
33 chr19:38462000-38467800 Weak transcription Aorta Aorta
34 chr19:38462000-38470200 Weak transcription Duodenum Mucosa Duodenum
35 chr19:38462200-38470800 Weak transcription Pancreatic Islets Pancreatic Islet
36 chr19:38462200-38471800 Enhancers Primary B cells from peripheral blood blood
37 chr19:38462600-38465400 Weak transcription Fetal Adrenal Gland Adrenal Gland
38 chr19:38462800-38468000 Weak transcription Brain Angular Gyrus brain
39 chr19:38463200-38468800 Weak transcription Esophagus oesophagus
40 chr19:38463400-38470400 Weak transcription Colonic Mucosa Colon
41 chr19:38463600-38469000 Weak transcription Fetal Intestine Large intestine
42 chr19:38463600-38476000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr19:38463800-38466600 Strong transcription Cortex derived primary cultured neurospheres brain
44 chr19:38463800-38468200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr19:38463800-38468200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr19:38463800-38468200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
47 chr19:38463800-38476200 Weak transcription Primary hematopoietic stem cells blood
48 chr19:38463800-38484800 Weak transcription Fetal Stomach stomach
49 chr19:38464000-38464600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
50 chr19:38464000-38466000 Strong transcription Primary T cells from cord blood blood

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Last update: Aug 31, 2015