The 2.0 version of rSNPBase

Variant report

Variant rs1725478
Chromosome Location chr19:38463797-38463798
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:38457200-38470400 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr19:38457600-38470200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr19:38457600-38470400 Weak transcription H1 Cell Line embryonic stem cell
4 chr19:38457600-38470400 Weak transcription HUES48 Cell Line embryonic stem cell
5 chr19:38457800-38468200 Weak transcription Muscle Satellite Cultured Cells --
6 chr19:38457800-38468400 Weak transcription NH-A brain
7 chr19:38458200-38468600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
8 chr19:38459000-38464800 ZNF genes & repeats A549 lung
9 chr19:38459400-38463800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
10 chr19:38460200-38463800 ZNF genes & repeats Fetal Intestine Small intestine
11 chr19:38460400-38463800 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
12 chr19:38460600-38468200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr19:38461000-38463800 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
14 chr19:38461000-38468200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
15 chr19:38461200-38468200 Weak transcription Breast Myoepithelial Primary Cells Breast
16 chr19:38461400-38465800 Weak transcription HepG2 liver
17 chr19:38461600-38465200 Weak transcription Lung lung
18 chr19:38461600-38466800 Weak transcription Left Ventricle heart
19 chr19:38461600-38468200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
20 chr19:38461600-38468400 Weak transcription Brain Cingulate Gyrus brain
21 chr19:38461600-38468400 Weak transcription Osteobl bone
22 chr19:38461600-38468600 Weak transcription Pancreas Pancrea
23 chr19:38461600-38470200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
24 chr19:38461600-38470200 Weak transcription Rectal Mucosa Donor 29 rectum
25 chr19:38461600-38470200 Weak transcription Rectal Mucosa Donor 31 rectum
26 chr19:38461600-38470200 Weak transcription Sigmoid Colon Sigmoid Colon
27 chr19:38461600-38470400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
28 chr19:38461600-38470400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
29 chr19:38461600-38470400 Weak transcription Gastric stomach
30 chr19:38461600-38472000 Weak transcription NHDF-Ad bronchial
31 chr19:38461600-38476600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr19:38461600-38493600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
33 chr19:38461600-38493600 Weak transcription Stomach Smooth Muscle stomach
34 chr19:38461800-38464400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr19:38461800-38470600 Weak transcription Skeletal Muscle Male skeletal muscle
36 chr19:38461800-38476800 Weak transcription H9 Cell Line embryonic stem cell
37 chr19:38462000-38464200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
38 chr19:38462000-38464400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
39 chr19:38462000-38464600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
40 chr19:38462000-38467800 Weak transcription Aorta Aorta
41 chr19:38462000-38470200 Weak transcription Duodenum Mucosa Duodenum
42 chr19:38462200-38470800 Weak transcription Pancreatic Islets Pancreatic Islet
43 chr19:38462200-38471800 Enhancers Primary B cells from peripheral blood blood
44 chr19:38462600-38464000 Weak transcription Primary T cells from cord blood blood
45 chr19:38462600-38465400 Weak transcription Fetal Adrenal Gland Adrenal Gland
46 chr19:38462800-38468000 Weak transcription Brain Angular Gyrus brain
47 chr19:38463200-38463800 ZNF genes & repeats Primary B cells from cord blood blood
48 chr19:38463200-38463800 ZNF genes & repeats Primary hematopoietic stem cells blood
49 chr19:38463200-38468800 Weak transcription Esophagus oesophagus
50 chr19:38463400-38463800 Flanking Active TSS GM12878-XiMat blood

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Last update: Aug 31, 2015