Variant report

Variant	rs17263168
Chromosome Location	chr5:41284743-41284744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10462015	0.81[AMR][1000 genomes]
rs10462016	0.81[AMR][1000 genomes]
rs1348603	0.81[AMR][1000 genomes]
rs16871155	0.81[AMR][1000 genomes]
rs16871178	0.81[AMR][1000 genomes]
rs72755939	0.83[AMR][1000 genomes]
rs72755946	0.81[AMR][1000 genomes]
rs72755951	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv880314	chr5:41271606-41298726	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv1800575	chr5:41271985-41288302	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41282000-41285800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr5:41283400-41286200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr5:41283400-41286200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr5:41283600-41285800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr5:41283600-41285800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:41283600-41286200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr5:41283800-41285400	Weak transcription	Fetal Heart	heart
8	chr5:41283800-41285600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr5:41284000-41285800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:41284600-41286200	Enhancers	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links