The 2.0 version of rSNPBase

Variant report

Variant rs172653
Chromosome Location chr8:59967529-59967530
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr8:59949200-59971000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr8:59957000-59967600 Weak transcription Primary T cells fromperipheralblood blood
3 chr8:59957200-59967600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
4 chr8:59957800-59989800 Weak transcription Duodenum Smooth Muscle Duodenum
5 chr8:59958600-59971000 Weak transcription H9 Cell Line embryonic stem cell
6 chr8:59958800-59967800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
7 chr8:59958800-59967800 Weak transcription Small Intestine intestine
8 chr8:59961200-59967600 Weak transcription Fetal Thymus thymus
9 chr8:59962800-59970800 Weak transcription Fetal Stomach stomach
10 chr8:59963000-59967800 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr8:59963000-59968000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
12 chr8:59963400-59967600 Weak transcription ES-WA7 Cell Line embryonic stem cell
13 chr8:59963400-59969400 Weak transcription Duodenum Mucosa Duodenum
14 chr8:59963600-59971000 Weak transcription Stomach Smooth Muscle stomach
15 chr8:59965200-59967600 Enhancers iPS-18 Cell Line embryonic stem cell
16 chr8:59965200-59971400 Weak transcription Pancreatic Islets Pancreatic Islet
17 chr8:59965400-59967600 Enhancers HUES48 Cell Line embryonic stem cell
18 chr8:59965400-59967600 Enhancers HUES64 Cell Line embryonic stem cell
19 chr8:59965800-59967600 Enhancers HUES6 Cell Line embryonic stem cell
20 chr8:59965800-59968000 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
21 chr8:59965800-59968200 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr8:59965800-59968400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
23 chr8:59965800-59968400 Enhancers Cortex derived primary cultured neurospheres brain
24 chr8:59965800-59968400 Enhancers NHDF-Ad bronchial
25 chr8:59965800-59973000 Enhancers iPS-15b Cell Line embryonic stem cell
26 chr8:59966000-59968600 Enhancers Colon Smooth Muscle Colon
27 chr8:59966000-59970800 Weak transcription Gastric stomach
28 chr8:59966200-59967600 Enhancers Primary T cells from cord blood blood
29 chr8:59966200-59968000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
30 chr8:59966400-59967600 Enhancers ES-I3 Cell Line embryonic stem cell
31 chr8:59966400-59968600 Weak transcription Fetal Heart heart
32 chr8:59966800-59967600 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
33 chr8:59966800-59967800 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr8:59966800-59967800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
35 chr8:59966800-59967800 Flanking Active TSS HUVEC blood vessel
36 chr8:59966800-59968000 Enhancers Rectal Mucosa Donor 31 rectum
37 chr8:59966800-59968400 Enhancers Primary T helper cells fromperipheralblood blood
38 chr8:59966800-59968600 Enhancers Primary T helper cells PMA-I stimulated --
39 chr8:59966800-59969400 Enhancers Primary B cells from peripheral blood blood
40 chr8:59966800-59969600 Flanking Active TSS Dnd41 blood
41 chr8:59967000-59967600 Weak transcription Primary T killer naive cells fromperipheralblood blood
42 chr8:59967000-59967600 Weak transcription Rectal Smooth Muscle rectum
43 chr8:59967000-59967600 Active TSS Osteobl bone
44 chr8:59967000-59968200 Enhancers Primary T helper naive cells from peripheral blood blood
45 chr8:59967000-59969600 Weak transcription Brain Germinal Matrix brain
46 chr8:59967400-59967800 Enhancers Primary B cells from cord blood blood
47 chr8:59967400-59967800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr8:59967400-59967800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr8:59967400-59967800 Weak transcription Rectal Mucosa Donor 29 rectum
50 chr8:59967400-59968000 Weak transcription Primary T helper naive cells fromperipheralblood blood

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Last update: Aug 31, 2015