Variant report

Variant	rs172654
Chromosome Location	chr8:59969407-59969408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59961013..59962935-chr8:59966885..59969916,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16924622	1.00[YRI][hapmap]
rs172653	0.81[ASN][1000 genomes]
rs2290526	1.00[YRI][hapmap]
rs2956799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs310369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs443245	0.88[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs4737533	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs866112	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59949200-59971000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:59957800-59989800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr8:59958600-59971000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:59962800-59970800	Weak transcription	Fetal Stomach	stomach
5	chr8:59963600-59971000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr8:59965200-59971400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:59965800-59973000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:59966000-59970800	Weak transcription	Gastric	stomach
9	chr8:59966800-59969600	Flanking Active TSS	Dnd41	blood
10	chr8:59967000-59969600	Weak transcription	Brain Germinal Matrix	brain
11	chr8:59967400-59970000	Enhancers	Primary hematopoietic stem cells	blood
12	chr8:59967400-59970000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr8:59967600-59970000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr8:59967600-59971600	Enhancers	Fetal Thymus	thymus
15	chr8:59967800-59970000	Enhancers	Primary T cells from cord blood	blood
16	chr8:59967800-59971400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr8:59968000-59970000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr8:59968000-59971000	Weak transcription	Left Ventricle	heart
19	chr8:59968000-59971400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr8:59968000-59973400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr8:59968000-59973600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr8:59968000-59976600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr8:59968200-59969800	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr8:59968200-59970800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr8:59968200-59971000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr8:59968200-59971000	Weak transcription	Small Intestine	intestine
27	chr8:59968200-59971200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr8:59968200-59972800	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr8:59968200-59973400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr8:59968200-59975600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr8:59968200-59976400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr8:59968400-59971000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr8:59968400-59971000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr8:59968400-59971200	Weak transcription	NHDF-Ad	bronchial
35	chr8:59968400-59972400	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr8:59968600-59969600	Enhancers	Fetal Heart	heart
37	chr8:59968600-59981200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr8:59968800-59970800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr8:59968800-59974200	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr8:59969000-59969600	Enhancers	Colon Smooth Muscle	Colon
41	chr8:59969000-59969600	Enhancers	Osteobl	bone
42	chr8:59969200-59969600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr8:59969200-59969600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr8:59969200-59969600	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr8:59969200-59969600	Enhancers	Thymus	Thymus
46	chr8:59969200-59969600	Enhancers	HSMMtube	muscle
47	chr8:59969200-59970000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr8:59969400-59969600	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr8:59969400-59970000	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr8:59969400-59970000	Enhancers	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links