Variant report

Variant	rs17278406
Chromosome Location	chr9:13976285-13976286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10961339	0.86[JPT][hapmap]
rs13283743	0.86[JPT][hapmap]
rs13291790	0.81[ASN][1000 genomes]
rs13302409	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17278798	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs28434367	0.86[ASN][1000 genomes]
rs35513591	0.81[ASN][1000 genomes]
rs4631565	0.89[AFR][1000 genomes]
rs7023574	0.86[JPT][hapmap]
rs7875291	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv892594	chr9:13970372-14005286	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13970800-13976600	Weak transcription	Fetal Muscle Leg	muscle
2	chr9:13972400-13977400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:13972800-13979600	Weak transcription	Fetal Lung	lung
4	chr9:13974400-13976400	Enhancers	HSMM	muscle
5	chr9:13974600-13976600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:13974800-13976800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:13974800-13977400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:13975200-13976800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:13975200-13977200	Enhancers	Fetal Kidney	kidney
10	chr9:13975400-13976800	Enhancers	Osteobl	bone
11	chr9:13975400-13977000	Enhancers	HUVEC	blood vessel
12	chr9:13975600-13976400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr9:13975800-13976800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:13975800-13976800	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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