Variant report

Variant	rs17284369
Chromosome Location	chr3:100561439-100561440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17217852	1.00[JPT][hapmap]
rs7644195	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877221	chr3:100546974-100592709	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv514163	chr3:100547342-100670846	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100505200-100582800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr3:100516000-100572200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:100517400-100594400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:100530000-100594400	Weak transcription	HSMM	muscle
5	chr3:100533800-100573000	Weak transcription	Aorta	Aorta
6	chr3:100549400-100563000	Weak transcription	Fetal Lung	lung
7	chr3:100549800-100562200	Weak transcription	Fetal Intestine Large	intestine
8	chr3:100555800-100568400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:100556000-100576200	Weak transcription	NHDF-Ad	bronchial
10	chr3:100558400-100564800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:100558400-100582800	Weak transcription	Ovary	ovary
12	chr3:100558600-100566200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr3:100558600-100571000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:100559000-100588200	Weak transcription	Fetal Stomach	stomach
15	chr3:100559400-100563400	Strong transcription	Osteobl	bone
16	chr3:100561200-100563000	Weak transcription	HSMMtube	muscle
17	chr3:100561400-100567400	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:100561400-100568800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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