Variant report

Variant	rs7644195
Chromosome Location	chr3:100556348-100556349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17284369	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877221	chr3:100546974-100592709	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv514163	chr3:100547342-100670846	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100505200-100558200	Weak transcription	Ovary	ovary
2	chr3:100505200-100582800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:100516000-100572200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:100517400-100594400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr3:100530000-100594400	Weak transcription	HSMM	muscle
6	chr3:100533800-100573000	Weak transcription	Aorta	Aorta
7	chr3:100539000-100558200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:100548600-100558200	Weak transcription	Fetal Stomach	stomach
9	chr3:100549400-100563000	Weak transcription	Fetal Lung	lung
10	chr3:100549800-100562200	Weak transcription	Fetal Intestine Large	intestine
11	chr3:100550600-100558000	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:100552400-100557800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr3:100553800-100557600	Weak transcription	HSMMtube	muscle
14	chr3:100555200-100558400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:100555800-100556800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:100555800-100568400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:100556000-100576200	Weak transcription	NHDF-Ad	bronchial
18	chr3:100556200-100556600	Weak transcription	Osteobl	bone
19	chr3:100556200-100557000	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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