Variant report

Variant	rs17285324
Chromosome Location	chr3:46482980-46482981
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2856758	0.89[AMR][1000 genomes]
rs3092960	0.84[AMR][1000 genomes]
rs3136535	0.89[AMR][1000 genomes]
rs41490645	0.89[AMR][1000 genomes]
rs4452362	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4453882	0.85[EUR][1000 genomes]
rs56063910	0.87[EUR][1000 genomes]
rs6782522	0.81[AMR][1000 genomes]
rs762790	0.84[AMR][1000 genomes]
rs7645306	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3323840	chr3:46352348-46497196	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3389382	chr3:46352798-46496696	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1014624	chr3:46463424-46549188	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46455800-46496800	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr3:46459400-46491600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:46465200-46488800	Weak transcription	Left Ventricle	heart
4	chr3:46465200-46488800	Weak transcription	Right Ventricle	heart
5	chr3:46477400-46484200	Weak transcription	Fetal Intestine Small	intestine
6	chr3:46479600-46485000	Enhancers	Primary T cells from cord blood	blood
7	chr3:46479600-46487000	Enhancers	Fetal Thymus	thymus
8	chr3:46479800-46485000	Enhancers	Dnd41	blood
9	chr3:46480200-46484200	Enhancers	Primary B cells from peripheral blood	blood
10	chr3:46480200-46504000	Weak transcription	Lung	lung
11	chr3:46480600-46483000	Strong transcription	Pancreas	Pancrea
12	chr3:46480600-46483200	Weak transcription	Thymus	Thymus
13	chr3:46481000-46488800	Strong transcription	Spleen	Spleen
14	chr3:46481200-46485800	Weak transcription	Gastric	stomach
15	chr3:46481600-46483400	Enhancers	GM12878-XiMat	blood
16	chr3:46481800-46484200	Enhancers	Primary B cells from cord blood	blood
17	chr3:46482000-46483000	Enhancers	Primary hematopoietic stem cells	blood
18	chr3:46482000-46483400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr3:46482000-46484000	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr3:46482200-46483000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:46482200-46483000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:46482200-46483200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr3:46482200-46483400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr3:46482200-46483400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr3:46482200-46483400	Enhancers	Duodenum Mucosa	Duodenum
26	chr3:46482200-46483600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr3:46482200-46483600	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr3:46482200-46483800	Enhancers	Primary T cells fromperipheralblood	blood
29	chr3:46482200-46483800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr3:46482200-46484000	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr3:46482200-46484200	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr3:46482200-46485000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr3:46482200-46485000	Enhancers	Fetal Brain Male	brain
34	chr3:46482400-46483600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr3:46482400-46485200	Enhancers	Fetal Lung	lung
36	chr3:46482600-46483000	Strong transcription	Adipose Nuclei	Adipose

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