Variant report

Variant	rs4452362
Chromosome Location	chr3:46470654-46470655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46463221..46464744-chr3:46469817..46472450,2	MCF-7	breast:
2	chr3:46428487..46432121-chr3:46469362..46472728,3	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1140865	0.83[EUR][1000 genomes]
rs11574428	0.83[EUR][1000 genomes]
rs11574429	0.83[EUR][1000 genomes]
rs11574434	0.83[EUR][1000 genomes]
rs11575821	0.81[EUR][1000 genomes]
rs17285324	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2157061	0.83[EUR][1000 genomes]
rs2157062	0.81[EUR][1000 genomes]
rs2856758	0.80[EUR][1000 genomes]
rs34291293	0.80[EUR][1000 genomes]
rs34445878	0.81[EUR][1000 genomes]
rs34971514	0.80[EUR][1000 genomes]
rs35388950	0.80[EUR][1000 genomes]
rs4453882	0.98[EUR][1000 genomes]
rs56063910	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6770674	0.83[EUR][1000 genomes]
rs6782522	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6787972	0.81[EUR][1000 genomes]
rs6791789	0.82[EUR][1000 genomes]
rs6798291	0.83[EUR][1000 genomes]
rs6808835	0.83[EUR][1000 genomes]
rs7645306	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7652037	0.81[EUR][1000 genomes]
rs916094	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3323840	chr3:46352348-46497196	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3389382	chr3:46352798-46496696	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1014624	chr3:46463424-46549188	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46455800-46496800	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr3:46459400-46491600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:46460200-46477000	Weak transcription	Pancreas	Pancrea
4	chr3:46461800-46477000	Weak transcription	Gastric	stomach
5	chr3:46465200-46488800	Weak transcription	Left Ventricle	heart
6	chr3:46465200-46488800	Weak transcription	Right Ventricle	heart
7	chr3:46467200-46474600	Weak transcription	Spleen	Spleen
8	chr3:46467400-46472200	Enhancers	NHEK	skin
9	chr3:46467600-46471000	Enhancers	Placenta	Placenta
10	chr3:46468000-46472200	Enhancers	Fetal Intestine Large	intestine
11	chr3:46468600-46472200	Enhancers	Fetal Intestine Small	intestine
12	chr3:46469000-46474400	Weak transcription	Primary T cells from cord blood	blood
13	chr3:46469400-46470800	Enhancers	Duodenum Mucosa	Duodenum
14	chr3:46469600-46472200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr3:46469800-46477200	Weak transcription	Adipose Nuclei	Adipose
16	chr3:46470000-46472000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr3:46470400-46471400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:46470600-46470800	Active TSS	Rectal Mucosa Donor 29	rectum
19	chr3:46470600-46471000	Weak transcription	Fetal Heart	heart
20	chr3:46470600-46471200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:46470600-46471400	Enhancers	Dnd41	blood
22	chr3:46470600-46472000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:46470600-46472200	Enhancers	HMEC	breast

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