Variant report

Variant	rs17285511
Chromosome Location	chr21:40093084-40093085
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11910178	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11911174	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11911341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836642	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2836643	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836644	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2836645	0.80[AMR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40088600-40097000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr21:40089000-40097200	Weak transcription	Aorta	Aorta
3	chr21:40090800-40093200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr21:40091200-40094000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr21:40091400-40094200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr21:40092200-40095600	Enhancers	Dnd41	blood
7	chr21:40093000-40093400	Enhancers	Fetal Thymus	thymus
8	chr21:40093000-40094000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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