Variant report

Variant	rs2836643
Chromosome Location	chr21:40093658-40093659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11910178	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11911174	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11911341	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17285511	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2017076	1.00[CEU][hapmap]
rs2836642	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2836644	1.00[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2836645	0.80[AMR][1000 genomes]
rs2836649	1.00[CEU][hapmap];0.81[CHD][hapmap];0.87[GIH][hapmap];0.89[MEX][hapmap]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40088600-40097000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr21:40089000-40097200	Weak transcription	Aorta	Aorta
3	chr21:40091200-40094000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr21:40091400-40094200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr21:40092200-40095600	Enhancers	Dnd41	blood
6	chr21:40093000-40094000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr21:40093200-40093800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr21:40093200-40094000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr21:40093200-40094200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr21:40093400-40093800	Weak transcription	Fetal Thymus	thymus
11	chr21:40093400-40094000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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