Variant report

Variant	rs17291207
Chromosome Location	chr8:64879035-64879036
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10089311	1.00[ASN][1000 genomes]
rs12675356	0.84[EUR][1000 genomes]
rs16919009	0.80[EUR][1000 genomes]
rs36121980	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7465464	1.00[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948343	chr8:64804219-65328394	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv890969	chr8:64807144-65047353	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64874600-64879200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:64874600-64883600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:64874800-64884000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:64877600-64879200	Weak transcription	Brain Angular Gyrus	brain
5	chr8:64878400-64879200	Enhancers	Fetal Brain Male	brain
6	chr8:64878400-64879600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:64878800-64879400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:64879000-64879200	Enhancers	Brain Anterior Caudate	brain
9	chr8:64879000-64879600	Enhancers	Aorta	Aorta
10	chr8:64879000-64879600	Enhancers	Brain Hippocampus Middle	brain
11	chr8:64879000-64879600	Flanking Active TSS	Brain Substantia Nigra	brain
12	chr8:64879000-64879600	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr8:64879000-64879800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr8:64879000-64879800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr8:64879000-64879800	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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