Variant report
| Variant | rs17292058 |
|---|---|
| Chromosome Location | chr4:62726234-62726235 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10021525 | 0.94[CEU][hapmap];0.80[GIH][hapmap];0.88[TSI][hapmap] |
| rs10021694 | 0.94[CEU][hapmap];0.80[GIH][hapmap];0.88[TSI][hapmap] |
| rs10446786 | 0.87[GIH][hapmap] |
| rs1839614 | 0.82[EUR][1000 genomes] |
| rs1868789 | 0.82[EUR][1000 genomes] |
| rs2013374 | 0.94[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs2122641 | 0.81[EUR][1000 genomes] |
| rs2122642 | 0.94[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs2345041 | 0.94[CEU][hapmap];0.81[GIH][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs28421285 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34764145 | 0.80[EUR][1000 genomes] |
| rs34855831 | 0.82[ASW][hapmap] |
| rs35946366 | 0.81[EUR][1000 genomes] |
| rs3860623 | 0.94[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4860434 | 0.80[JPT][hapmap] |
| rs6551658 | 0.81[EUR][1000 genomes] |
| rs6551660 | 0.94[CEU][hapmap] |
| rs6551662 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6845019 | 0.94[CEU][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs7695134 | 0.94[CEU][hapmap];0.82[GIH][hapmap] |
| rs990640 | 0.94[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs9990553 | 0.94[CEU][hapmap];0.80[GIH][hapmap];0.88[TSI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv461377 | chr4:62368762-62883431 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv594328 | chr4:62368762-62883431 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv829949 | chr4:62615637-62761629 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv428760 | chr4:62649399-62824542 | Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:62724600-62742800 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 2 | chr4:62726200-62726400 | Enhancers | Fetal Muscle Leg | muscle |
