Variant report

Variant	rs6845019
Chromosome Location	chr4:62701222-62701223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10000772	0.84[ASN][1000 genomes]
rs10004644	0.91[EUR][1000 genomes]
rs10021525	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs10021694	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs11734607	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs12509742	0.90[CHB][hapmap];0.80[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12641643	0.91[EUR][1000 genomes]
rs12651006	0.91[EUR][1000 genomes]
rs1551096	0.91[EUR][1000 genomes]
rs17090543	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17292058	0.94[CEU][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap];0.82[EUR][1000 genomes]
rs1817052	0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs1839614	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1868789	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1868790	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1901222	1.00[ASN][1000 genomes]
rs1901223	0.81[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs2013374	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2122640	0.81[JPT][hapmap]
rs2122641	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2122642	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2167280	0.88[ASN][1000 genomes]
rs2198056	0.98[ASN][1000 genomes]
rs2345041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28421285	0.82[EUR][1000 genomes]
rs28534995	0.98[ASN][1000 genomes]
rs28587627	0.84[ASN][1000 genomes]
rs2881027	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs34637663	1.00[ASN][1000 genomes]
rs34764145	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34907045	0.98[ASN][1000 genomes]
rs35946366	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3860623	0.89[CEU][hapmap];0.81[GIH][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs4467601	0.96[ASN][1000 genomes]
rs4487384	0.84[ASN][1000 genomes]
rs4860434	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4860436	0.91[EUR][1000 genomes]
rs62304373	0.98[ASN][1000 genomes]
rs6551658	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6551659	0.91[EUR][1000 genomes]
rs6551660	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6551662	0.86[EUR][1000 genomes]
rs6832443	0.91[EUR][1000 genomes]
rs6855424	0.84[ASN][1000 genomes]
rs7437698	0.91[EUR][1000 genomes]
rs7665141	0.91[EUR][1000 genomes]
rs7676289	0.88[ASN][1000 genomes]
rs7679793	0.98[ASN][1000 genomes]
rs7695134	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[EUR][1000 genomes]
rs9790538	1.00[ASN][1000 genomes]
rs9884313	0.99[ASN][1000 genomes]
rs990640	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9942184	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9990553	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829949	chr4:62615637-62761629	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428760	chr4:62649399-62824542	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62695000-62704000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:62698000-62703600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:62700200-62702400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:62700200-62704200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:62700400-62701600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:62700400-62703000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:62700400-62704200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:62700400-62704800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr4:62700800-62701800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr4:62700800-62702600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr4:62701000-62701400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr4:62701200-62701600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr4:62701200-62701800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:62701200-62701800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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