Variant report

Variant	rs4860436
Chromosome Location	chr4:62705106-62705107
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10004644	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10006513	0.85[ASN][1000 genomes]
rs10017044	0.85[ASN][1000 genomes]
rs10021525	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10021694	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1031341	0.85[ASN][1000 genomes]
rs12641643	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12651006	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1376306	0.87[ASN][1000 genomes]
rs1376307	0.87[ASN][1000 genomes]
rs1450901	0.83[ASN][1000 genomes]
rs1470721	0.87[ASN][1000 genomes]
rs1551096	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1839614	0.91[EUR][1000 genomes]
rs1868789	0.91[EUR][1000 genomes]
rs2013374	0.93[EUR][1000 genomes]
rs2122641	0.93[EUR][1000 genomes]
rs2122642	0.93[EUR][1000 genomes]
rs2345041	0.93[EUR][1000 genomes]
rs28861113	0.85[ASN][1000 genomes]
rs34764145	0.88[EUR][1000 genomes]
rs35946366	0.93[EUR][1000 genomes]
rs4493573	0.82[ASN][1000 genomes]
rs4860104	0.87[ASN][1000 genomes]
rs4860435	0.87[ASN][1000 genomes]
rs6551658	0.93[EUR][1000 genomes]
rs6551659	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6551660	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6818785	0.87[ASN][1000 genomes]
rs6832443	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6845019	0.91[EUR][1000 genomes]
rs7437698	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7656882	0.85[ASN][1000 genomes]
rs7665141	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7695134	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs969965	0.87[ASN][1000 genomes]
rs990640	0.91[EUR][1000 genomes]
rs9990553	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829949	chr4:62615637-62761629	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428760	chr4:62649399-62824542	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62701800-62707000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:62703600-62705200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:62704200-62706400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:62704200-62706800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:62704200-62707000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:62704400-62706600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr4:62704800-62706600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:62704800-62706800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:62705000-62706400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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