Variant report

Variant	rs28534995
Chromosome Location	chr4:62682315-62682316
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-POLR2B-15	chr4:62682057-62682364	l_2654_chr4:62682056-62697259_heart

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10000772	0.84[ASN][1000 genomes]
rs11734607	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12509742	0.89[ASN][1000 genomes]
rs17090543	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1817052	0.94[ASN][1000 genomes]
rs1839614	0.86[ASN][1000 genomes]
rs1868789	0.97[ASN][1000 genomes]
rs1868790	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1901222	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1901223	0.89[ASN][1000 genomes]
rs2013374	0.97[ASN][1000 genomes]
rs2122641	0.97[ASN][1000 genomes]
rs2122642	0.89[ASN][1000 genomes]
rs2167280	0.89[ASN][1000 genomes]
rs2198056	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2345041	0.97[ASN][1000 genomes]
rs28587627	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2881027	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34637663	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34907045	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35946366	0.98[ASN][1000 genomes]
rs4467601	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4487384	0.87[ASN][1000 genomes]
rs4860434	0.89[ASN][1000 genomes]
rs62304373	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6551658	0.98[ASN][1000 genomes]
rs6845019	0.98[ASN][1000 genomes]
rs6855424	0.87[ASN][1000 genomes]
rs7676289	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7679793	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9790538	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9884313	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs990640	0.93[ASN][1000 genomes]
rs9942184	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829949	chr4:62615637-62761629	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428760	chr4:62649399-62824542	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62662800-62682400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:62672000-62682400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:62674000-62682400	Weak transcription	Aorta	Aorta
4	chr4:62681200-62682400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:62681200-62693000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:62681600-62682600	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:62681600-62684000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:62681800-62682400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:62681800-62683400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:62682000-62684000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr4:62682200-62682400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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