Variant report

Variant	rs17294476
Chromosome Location	chr15:83586926-83586927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83586374..83589449-chr15:83652262..83656378,6	MCF-7	breast:
2	chr15:83564369..83566248-chr15:83586818..83589163,2	K562	blood:
3	chr15:83586586..83589404-chr15:83610320..83612935,3	MCF-7	breast:
4	chr15:83586563..83590594-chr15:83604214..83607566,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103942	Chromatin interaction
ENSG00000169612	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10400812	0.90[JPT][hapmap]
rs11853742	0.82[JPT][hapmap]
rs12592391	0.90[JPT][hapmap]
rs12593316	0.82[JPT][hapmap]
rs12900411	0.90[JPT][hapmap]
rs12902721	0.90[JPT][hapmap]
rs12903066	0.90[JPT][hapmap]
rs12907032	0.90[JPT][hapmap]
rs12913130	0.90[JPT][hapmap]
rs12913501	0.86[CEU][hapmap];0.83[AMR][1000 genomes]
rs13329195	0.90[JPT][hapmap]
rs17158127	0.90[JPT][hapmap]
rs17507300	0.90[JPT][hapmap]
rs2219889	0.98[ASN][1000 genomes]
rs2381030	0.90[JPT][hapmap]
rs28436027	0.82[JPT][hapmap]
rs3087804	0.90[JPT][hapmap]
rs4079029	0.90[JPT][hapmap]
rs4843144	1.00[YRI][hapmap]
rs4843146	1.00[YRI][hapmap]
rs6603044	0.82[JPT][hapmap]
rs6603046	0.90[JPT][hapmap]
rs6603047	0.82[JPT][hapmap]
rs7177599	0.90[JPT][hapmap]
rs750214	0.90[JPT][hapmap]
rs7757	0.90[JPT][hapmap]
rs8023669	0.90[JPT][hapmap]
rs8037783	0.90[JPT][hapmap]
rs9646239	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83570400-83591600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:83581600-83587200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr15:83582600-83592600	Enhancers	Liver	Liver
4	chr15:83583000-83587200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:83583200-83597200	Enhancers	Pancreas	Pancrea
6	chr15:83585000-83587400	Enhancers	Gastric	stomach
7	chr15:83585000-83587600	Enhancers	Fetal Muscle Leg	muscle
8	chr15:83585000-83587800	Enhancers	Psoas Muscle	Psoas
9	chr15:83585200-83587200	Enhancers	HepG2	liver
10	chr15:83585200-83587600	Enhancers	Spleen	Spleen
11	chr15:83585200-83587800	Enhancers	Left Ventricle	heart
12	chr15:83585400-83587600	Enhancers	Fetal Muscle Trunk	muscle
13	chr15:83585600-83587000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:83585600-83599200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr15:83585800-83587800	Weak transcription	Brain Angular Gyrus	brain
16	chr15:83585800-83600000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:83586000-83589400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr15:83586200-83589400	Enhancers	Stomach Mucosa	stomach
19	chr15:83586400-83587200	Weak transcription	Ovary	ovary
20	chr15:83586400-83587200	Weak transcription	Right Ventricle	heart
21	chr15:83586600-83587400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr15:83586600-83587600	Weak transcription	Brain Hippocampus Middle	brain
23	chr15:83586600-83588000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr15:83586600-83619400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr15:83586800-83587200	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr15:83586800-83587800	Weak transcription	Brain Substantia Nigra	brain
27	chr15:83586800-83588800	Enhancers	Right Atrium	heart

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