Variant report

Variant	rs17158127
Chromosome Location	chr15:83686759-83686760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:83682363-83686962	K562	blood:	n/a	n/a
2	E2F4	chr15:83686740-83687336	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:83685645..83690096-chr15:83691641..83694486,5	MCF-7	breast:
2	chr15:83684703..83687598-chr15:83730655..83733296,2	K562	blood:
3	chr15:83684576..83687517-chr15:83693136..83695627,2	K562	blood:

Variant related genes	Relation type
ENSG00000260351	TF binding region
ENSG00000259767	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10400812	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10520576	1.00[JPT][hapmap]
rs1112404	1.00[JPT][hapmap]
rs11259965	1.00[JPT][hapmap]
rs11259969	1.00[JPT][hapmap]
rs11852408	1.00[JPT][hapmap]
rs11852496	1.00[JPT][hapmap]
rs11853742	0.91[JPT][hapmap]
rs11856171	1.00[JPT][hapmap]
rs11857641	1.00[JPT][hapmap]
rs11858074	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858377	1.00[JPT][hapmap]
rs12440386	1.00[JPT][hapmap]
rs12441585	1.00[JPT][hapmap]
rs12443109	1.00[JPT][hapmap]
rs12591237	0.83[ASN][1000 genomes]
rs12591855	1.00[JPT][hapmap]
rs12592391	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12593316	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs12593638	0.91[JPT][hapmap]
rs12594496	1.00[JPT][hapmap]
rs12595330	1.00[JPT][hapmap]
rs12899522	0.88[ASN][1000 genomes]
rs12900411	0.89[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12901811	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12902721	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.80[MKK][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12903066	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12904695	0.95[ASN][1000 genomes]
rs12906027	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12906626	0.95[ASN][1000 genomes]
rs12907032	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12911706	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12911891	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12913130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12917594	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13329195	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13329269	0.88[ASN][1000 genomes]
rs17158080	1.00[JPT][hapmap]
rs17294476	0.90[JPT][hapmap]
rs17507300	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17567151	1.00[JPT][hapmap]
rs17567869	1.00[JPT][hapmap]
rs17568459	1.00[JPT][hapmap]
rs2034617	0.91[JPT][hapmap]
rs2034618	1.00[JPT][hapmap]
rs2084839	0.83[ASN][1000 genomes]
rs2381030	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs28436027	0.91[JPT][hapmap]
rs28485801	0.95[ASN][1000 genomes]
rs28580677	0.95[ASN][1000 genomes]
rs3087804	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs34869943	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35207081	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35627116	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36038412	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4079029	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4563011	1.00[JPT][hapmap]
rs58329615	0.81[ASN][1000 genomes]
rs6603044	0.82[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs6603046	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6603047	0.91[JPT][hapmap]
rs66606849	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67482297	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67822554	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7163516	0.89[ASN][1000 genomes]
rs7164083	0.82[JPT][hapmap]
rs7165114	1.00[JPT][hapmap]
rs7165978	1.00[JPT][hapmap]
rs7166645	0.94[ASN][1000 genomes]
rs7170547	0.94[ASN][1000 genomes]
rs7177599	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7181169	0.95[ASN][1000 genomes]
rs7495911	1.00[JPT][hapmap]
rs750214	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7757	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8023669	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap]
rs8027193	1.00[JPT][hapmap]
rs8027577	1.00[JPT][hapmap]
rs8031896	0.97[ASN][1000 genomes]
rs8035810	1.00[JPT][hapmap]
rs8037783	1.00[JPT][hapmap]
rs8038486	1.00[JPT][hapmap]
rs8040457	0.94[ASN][1000 genomes]
rs8040998	1.00[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs8043224	1.00[JPT][hapmap]
rs9646239	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965264	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83680800-83688800	Weak transcription	Aorta	Aorta
2	chr15:83681000-83700200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:83681000-83705000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:83681200-83687400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:83681200-83688800	Weak transcription	Psoas Muscle	Psoas
6	chr15:83681200-83693400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:83681200-83698200	Weak transcription	NHLF	lung
8	chr15:83681200-83710200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:83681400-83687200	Weak transcription	Colonic Mucosa	Colon
10	chr15:83681400-83698000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:83681400-83698400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:83681600-83686800	Weak transcription	Brain Substantia Nigra	brain
13	chr15:83681600-83687200	Weak transcription	Brain Angular Gyrus	brain
14	chr15:83681600-83687200	Weak transcription	Small Intestine	intestine
15	chr15:83681600-83687400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:83681600-83688800	Weak transcription	Brain Anterior Caudate	brain
17	chr15:83681600-83688800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr15:83681600-83698200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr15:83681600-83698200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr15:83681600-83732000	Weak transcription	Stomach Mucosa	stomach
21	chr15:83681800-83687200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr15:83681800-83687200	Weak transcription	HepG2	liver
23	chr15:83681800-83687400	Weak transcription	Fetal Stomach	stomach
24	chr15:83681800-83687400	Weak transcription	Right Ventricle	heart
25	chr15:83681800-83689000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr15:83682000-83687200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr15:83682000-83687200	Weak transcription	Thymus	Thymus
28	chr15:83682000-83688800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr15:83682000-83688800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr15:83682000-83688800	Weak transcription	Esophagus	oesophagus
31	chr15:83682000-83708400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr15:83682200-83708600	Weak transcription	Fetal Heart	heart
33	chr15:83682400-83687400	Weak transcription	Lung	lung
34	chr15:83682800-83687800	Strong transcription	A549	lung
35	chr15:83682800-83689000	Weak transcription	Fetal Kidney	kidney
36	chr15:83683000-83691000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr15:83683000-83723000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr15:83683200-83688800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr15:83683400-83687200	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr15:83683400-83687200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr15:83683400-83687200	Weak transcription	Gastric	stomach
42	chr15:83683400-83687400	Weak transcription	Pancreas	Pancrea
43	chr15:83683400-83687400	Weak transcription	Spleen	Spleen
44	chr15:83683400-83688000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr15:83683400-83689000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr15:83683400-83726600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr15:83683600-83690200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr15:83684000-83691000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr15:83684200-83689200	Strong transcription	Skeletal Muscle Male	skeletal muscle
50	chr15:83684200-83690400	Strong transcription	Left Ventricle	heart

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