Variant report

Variant	rs7170547
Chromosome Location	chr15:83737571-83737572
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:83733297..83738085-chr15:83874642..83880991,12	MCF-7	breast:
2	chr15:83678946..83682301-chr15:83733959..83737732,7	K562	blood:
3	chr15:83679205..83686226-chr15:83733349..83739878,12	K562	blood:
4	chr15:83734015..83735613-chr15:83737499..83739038,2	K562	blood:
5	chr15:83678535..83684480-chr15:83731660..83738533,12	MCF-7	breast:
6	chr15:83731075..83738271-chr15:83771545..83781798,12	K562	blood:
7	chr15:83679004..83681789-chr15:83733343..83738150,8	MCF-7	breast:
8	chr15:83233945..83235595-chr15:83736586..83738485,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000166503	Chromatin interaction
ENSG00000249214	Chromatin interaction
ENSG00000260608	Chromatin interaction
ENSG00000169609	Chromatin interaction
ENSG00000136404	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10400812	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11858074	0.94[ASN][1000 genomes]
rs12439782	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12592391	0.94[ASN][1000 genomes]
rs12593316	0.83[ASN][1000 genomes]
rs12899522	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12900411	0.94[ASN][1000 genomes]
rs12901811	0.94[ASN][1000 genomes]
rs12902721	0.90[ASN][1000 genomes]
rs12903066	0.94[ASN][1000 genomes]
rs12904695	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12906027	0.94[ASN][1000 genomes]
rs12906626	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12907032	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12911706	0.94[ASN][1000 genomes]
rs12911891	0.94[ASN][1000 genomes]
rs12913130	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12917594	0.95[ASN][1000 genomes]
rs13329195	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13329269	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17158127	0.94[ASN][1000 genomes]
rs17507300	0.97[ASN][1000 genomes]
rs2084839	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2381030	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28485801	0.95[ASN][1000 genomes]
rs28580677	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3087804	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34869943	0.90[ASN][1000 genomes]
rs35207081	0.94[ASN][1000 genomes]
rs35627116	0.95[ASN][1000 genomes]
rs36038412	0.94[ASN][1000 genomes]
rs4079029	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs61375537	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6603044	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6603046	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66606849	0.94[ASN][1000 genomes]
rs67482297	0.94[ASN][1000 genomes]
rs67822554	0.94[ASN][1000 genomes]
rs7163516	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7166645	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7172665	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7177599	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7181169	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs750214	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757	0.94[ASN][1000 genomes]
rs8031896	0.97[ASN][1000 genomes]
rs8040457	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040998	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9646239	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7170547	HDGFRP3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83736000-83737600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
2	chr15:83736600-83737600	Enhancers	H1 Cell Line	embryonic stem cell
3	chr15:83736600-83738800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr15:83736600-83739000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:83736800-83738800	Weak transcription	Osteobl	bone
6	chr15:83736800-83739200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:83737000-83737600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr15:83737000-83738600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr15:83737000-83739800	Weak transcription	Fetal Muscle Leg	muscle
10	chr15:83737400-83738600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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