Variant report

Variant	rs61375537
Chromosome Location	chr15:83720656-83720657
allele	lengthTooLong
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83718422..83721272-chr15:83727802..83729791,2	MCF-7	breast:
2	chr15:83683189..83685982-chr15:83719476..83721962,2	MCF-7	breast:
3	chr15:83719346..83723182-chr15:83733167..83737107,5	MCF-7	breast:
4	chr15:83715424..83718064-chr15:83719632..83721624,3	K562	blood:
5	chr15:83715424..83717754-chr15:83719632..83721290,2	K562	blood:
6	chr15:83680450..83681968-chr15:83719414..83722223,2	K562	blood:

Variant related genes	Relation type
ENSG00000249214	Chromatin interaction
ENSG00000263643	Chromatin interaction
ENSG00000260608	Chromatin interaction
ENSG00000064726	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10400812	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12439782	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12899522	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12904695	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12906626	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12907032	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12913130	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13329195	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13329269	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2084839	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2381030	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3087804	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6603044	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6603046	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7163516	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7166645	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7170547	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7172665	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7177599	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7181169	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs750214	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8040457	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8040998	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83681600-83732000	Weak transcription	Stomach Mucosa	stomach
2	chr15:83683000-83723000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:83683400-83726600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:83697800-83721000	Strong transcription	Fetal Intestine Large	intestine
5	chr15:83699000-83725800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:83700400-83734400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:83701600-83732800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:83705000-83720800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:83705000-83725800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr15:83705000-83731000	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr15:83705600-83721400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:83706000-83725400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr15:83706800-83726600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:83707000-83725400	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr15:83707400-83725400	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr15:83708000-83722000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr15:83708000-83725400	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr15:83708600-83726000	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr15:83708800-83726400	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr15:83708800-83726600	Weak transcription	Pancreas	Pancrea
21	chr15:83709000-83726600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr15:83709000-83726600	Weak transcription	Fetal Brain Male	brain
23	chr15:83709200-83724400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr15:83709200-83727000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr15:83709600-83730800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr15:83710400-83722800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr15:83710600-83722000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:83710600-83723800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr15:83710600-83723800	Weak transcription	Brain Angular Gyrus	brain
30	chr15:83710600-83730200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr15:83710600-83730200	Weak transcription	Esophagus	oesophagus
32	chr15:83710800-83725800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr15:83711400-83720800	Strong transcription	K562	blood
34	chr15:83711800-83724800	Strong transcription	Hela-S3	cervix
35	chr15:83711800-83725000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr15:83712200-83725800	Weak transcription	Right Ventricle	heart
37	chr15:83712400-83722600	Weak transcription	Brain Germinal Matrix	brain
38	chr15:83712600-83722800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr15:83713400-83725600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr15:83713600-83726600	Weak transcription	Gastric	stomach
41	chr15:83714200-83730200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr15:83714400-83720800	Weak transcription	Fetal Intestine Small	intestine
43	chr15:83714400-83726600	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr15:83714800-83725800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr15:83715200-83725400	Strong transcription	Liver	Liver
46	chr15:83715600-83725000	Strong transcription	Duodenum Mucosa	Duodenum
47	chr15:83716200-83725400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr15:83716400-83721200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr15:83716600-83721200	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr15:83717000-83725600	Weak transcription	Fetal Heart	heart

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