Variant report

Variant	rs36038412
Chromosome Location	chr15:83689704-83689705
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:83688240..83691161-chr15:83697132..83700281,3	K562	blood:
2	chr15:83685645..83690096-chr15:83691641..83694486,5	MCF-7	breast:
3	chr15:83679349..83680973-chr15:83688318..83689991,2	MCF-7	breast:
4	chr15:83683950..83686257-chr15:83688068..83690972,3	MCF-7	breast:
5	chr15:83679667..83682766-chr15:83686991..83690446,4	MCF-7	breast:
6	chr15:83680931..83684060-chr15:83687587..83694949,8	K562	blood:
7	chr15:83679499..83683217-chr15:83687466..83692124,6	K562	blood:
8	chr15:83687509..83691091-chr15:83696720..83699538,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000260608	Chromatin interaction
ENSG00000169609	Chromatin interaction
ENSG00000064726	Chromatin interaction
ENSG00000259767	Chromatin interaction
ENSG00000249214	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10400812	0.95[ASN][1000 genomes]
rs11858074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12591237	0.83[ASN][1000 genomes]
rs12592391	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12593316	0.86[ASN][1000 genomes]
rs12899522	0.88[ASN][1000 genomes]
rs12900411	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12901811	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12902721	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12903066	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12904695	0.95[ASN][1000 genomes]
rs12906027	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12906626	0.95[ASN][1000 genomes]
rs12907032	0.95[ASN][1000 genomes]
rs12911706	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12911891	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12913130	0.95[ASN][1000 genomes]
rs12917594	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13329195	0.95[ASN][1000 genomes]
rs13329269	0.88[ASN][1000 genomes]
rs17158127	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17507300	0.97[ASN][1000 genomes]
rs2084839	0.83[ASN][1000 genomes]
rs2381030	0.94[ASN][1000 genomes]
rs28485801	0.95[ASN][1000 genomes]
rs28580677	0.95[ASN][1000 genomes]
rs3087804	0.95[ASN][1000 genomes]
rs34869943	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35207081	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35627116	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4079029	0.95[ASN][1000 genomes]
rs58329615	0.81[ASN][1000 genomes]
rs6603044	0.95[ASN][1000 genomes]
rs6603046	0.94[ASN][1000 genomes]
rs66606849	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67482297	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67822554	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7163516	0.89[ASN][1000 genomes]
rs7166645	0.94[ASN][1000 genomes]
rs7170547	0.94[ASN][1000 genomes]
rs7177599	0.95[ASN][1000 genomes]
rs7181169	0.95[ASN][1000 genomes]
rs750214	0.94[ASN][1000 genomes]
rs7757	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8031896	0.97[ASN][1000 genomes]
rs8040457	0.94[ASN][1000 genomes]
rs8040998	0.95[ASN][1000 genomes]
rs9646239	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83681000-83700200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:83681000-83705000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:83681200-83693400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr15:83681200-83698200	Weak transcription	NHLF	lung
5	chr15:83681200-83710200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:83681400-83698000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:83681400-83698400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:83681600-83698200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr15:83681600-83698200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:83681600-83732000	Weak transcription	Stomach Mucosa	stomach
11	chr15:83682000-83708400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:83682200-83708600	Weak transcription	Fetal Heart	heart
13	chr15:83683000-83691000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:83683000-83723000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr15:83683400-83726600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:83683600-83690200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr15:83684000-83691000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:83684200-83690400	Strong transcription	Left Ventricle	heart
19	chr15:83684200-83690400	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr15:83684200-83690800	Strong transcription	GM12878-XiMat	blood
21	chr15:83684200-83691200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:83684200-83691200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:83684200-83691400	Strong transcription	Fetal Muscle Trunk	muscle
24	chr15:83684400-83690200	Strong transcription	HSMM	muscle
25	chr15:83684400-83690400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr15:83684400-83690400	Strong transcription	Stomach Smooth Muscle	stomach
27	chr15:83684400-83690800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr15:83684400-83691000	Strong transcription	Primary B cells from peripheral blood	blood
29	chr15:83684400-83691000	Strong transcription	Hela-S3	cervix
30	chr15:83684600-83690000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr15:83684600-83690200	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr15:83684600-83691000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr15:83684600-83691000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr15:83684600-83691200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr15:83684600-83691200	Strong transcription	Fetal Thymus	thymus
36	chr15:83684600-83693000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr15:83684600-83695200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr15:83684800-83690400	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr15:83685200-83690400	Strong transcription	Duodenum Mucosa	Duodenum
40	chr15:83685200-83691000	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr15:83685400-83690000	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr15:83685400-83690200	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr15:83685400-83690800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr15:83685400-83690800	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr15:83685600-83690000	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr15:83685600-83690000	Strong transcription	NHDF-Ad	bronchial
47	chr15:83685600-83690200	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr15:83685600-83691000	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr15:83685600-83693800	Strong transcription	Fetal Muscle Leg	muscle
50	chr15:83685800-83689800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links