Variant report

Variant	rs11852496
Chromosome Location	chr15:83817559-83817560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83816276..83818031-chr15:83822505..83824012,2	MCF-7	breast:
2	chr15:83790187..83792609-chr15:83813978..83817827,3	K562	blood:
3	chr15:83813627..83817945-chr15:83876310..83878663,3	MCF-7	breast:
4	chr15:83817376..83819592-chr15:83828370..83830722,2	K562	blood:

Variant related genes	Relation type
ENSG00000166503	Chromatin interaction

Extended variants
information (count: 196 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:195)

rs_ID	r²[population]
rs10400812	1.00[JPT][hapmap]
rs1045742	0.88[CEU][hapmap]
rs10520576	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1075619	1.00[CEU][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1112404	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.93[TSI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11259903	0.92[ASN][1000 genomes]
rs11259905	0.94[ASW][hapmap];0.88[CEU][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.82[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11259906	0.95[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11259965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11259967	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11259968	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11259969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11259970	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11852287	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11852408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11852446	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11853498	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11853742	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs11853977	0.85[ASN][1000 genomes]
rs11854520	0.86[ASN][1000 genomes]
rs11854888	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11855639	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11856000	0.92[ASN][1000 genomes]
rs11856164	1.00[CEU][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11856171	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11856806	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11857428	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11857641	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11857878	0.83[ASN][1000 genomes]
rs11858162	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs11858377	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11858468	0.94[CEU][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]
rs12437558	0.82[EUR][1000 genomes]
rs12437858	0.80[EUR][1000 genomes]
rs12437901	0.82[EUR][1000 genomes]
rs12438398	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438526	0.81[EUR][1000 genomes]
rs12438575	0.82[EUR][1000 genomes]
rs12438708	0.81[EUR][1000 genomes]
rs12439122	0.85[MEX][hapmap];0.82[EUR][1000 genomes]
rs12439903	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12440265	0.94[CEU][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs12440386	1.00[ASW][hapmap];0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.91[MKK][hapmap];0.89[TSI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12440562	1.00[CEU][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12441006	0.82[EUR][1000 genomes]
rs12441409	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12441575	0.82[EUR][1000 genomes]
rs12441585	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12441847	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12442572	0.92[ASN][1000 genomes]
rs12443109	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12443424	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12591855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12592391	1.00[JPT][hapmap]
rs12593316	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs12593532	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12593638	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12594496	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12595330	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12900411	1.00[JPT][hapmap]
rs12902721	1.00[JPT][hapmap]
rs12903066	1.00[JPT][hapmap]
rs12907032	1.00[JPT][hapmap]
rs12913130	1.00[JPT][hapmap]
rs13329195	1.00[JPT][hapmap]
rs17158080	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17158127	1.00[JPT][hapmap]
rs17361375	0.94[CEU][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs17507300	1.00[JPT][hapmap]
rs17507693	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17507763	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17508610	1.00[CEU][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17509233	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17567151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17567869	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17568298	1.00[CEU][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17568459	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1880532	0.80[EUR][1000 genomes]
rs1901544	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2034617	0.86[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];1.00[ASN][1000 genomes]
rs2034618	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2084839	0.80[ASN][1000 genomes]
rs2167600	0.84[ASN][1000 genomes]
rs2381030	1.00[JPT][hapmap]
rs28373753	0.97[ASN][1000 genomes]
rs28436027	0.86[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs28538218	0.84[ASN][1000 genomes]
rs28623260	0.97[ASN][1000 genomes]
rs28625676	0.92[ASN][1000 genomes]
rs28678434	0.84[ASN][1000 genomes]
rs28754750	1.00[ASN][1000 genomes]
rs3087804	1.00[JPT][hapmap]
rs4079029	1.00[JPT][hapmap]
rs41326445	1.00[CEU][hapmap];0.93[TSI][hapmap]
rs4341707	0.84[ASN][1000 genomes]
rs4386103	0.84[ASN][1000 genomes]
rs4389108	0.84[ASN][1000 genomes]
rs4408505	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4423388	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4480763	0.88[CEU][hapmap];0.85[MEX][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs4531702	0.84[ASN][1000 genomes]
rs4563011	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4572349	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55683536	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55756182	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55878453	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55893521	0.82[EUR][1000 genomes]
rs55905779	0.81[EUR][1000 genomes]
rs55932429	0.81[EUR][1000 genomes]
rs56045305	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56052029	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56352317	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56391827	0.93[ASN][1000 genomes]
rs57219675	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57729044	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58006707	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58281154	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58292616	0.96[ASN][1000 genomes]
rs58329615	0.86[ASN][1000 genomes]
rs59896565	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60344060	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60819629	0.82[EUR][1000 genomes]
rs60935326	0.99[ASN][1000 genomes]
rs61267530	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61323939	0.93[ASN][1000 genomes]
rs62010162	0.80[EUR][1000 genomes]
rs62010164	0.82[EUR][1000 genomes]
rs62010165	0.82[EUR][1000 genomes]
rs62010166	0.82[EUR][1000 genomes]
rs62010173	0.82[EUR][1000 genomes]
rs62010174	0.80[EUR][1000 genomes]
rs62010175	0.82[EUR][1000 genomes]
rs62010177	0.80[EUR][1000 genomes]
rs62010212	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010214	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010215	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62010220	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62010248	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62010252	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62010254	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62010255	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62010258	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62011869	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62025914	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62025915	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62025919	0.81[EUR][1000 genomes]
rs62025921	0.81[EUR][1000 genomes]
rs6602970	0.86[ASN][1000 genomes]
rs6603044	0.91[JPT][hapmap]
rs6603046	1.00[JPT][hapmap]
rs6603047	1.00[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.99[ASN][1000 genomes]
rs66603627	0.85[ASN][1000 genomes]
rs66619192	0.82[EUR][1000 genomes]
rs66757932	0.80[EUR][1000 genomes]
rs66982382	0.85[ASN][1000 genomes]
rs67933024	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7164083	1.00[CEU][hapmap];0.82[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7165114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7165978	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.96[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7172590	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7173166	0.95[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7177599	1.00[JPT][hapmap]
rs7179675	0.80[EUR][1000 genomes]
rs7180407	0.87[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7180692	0.82[EUR][1000 genomes]
rs72755992	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73437314	0.96[ASN][1000 genomes]
rs73437324	0.96[ASN][1000 genomes]
rs73437329	0.96[ASN][1000 genomes]
rs73437330	0.96[ASN][1000 genomes]
rs73438913	0.90[ASN][1000 genomes]
rs73438921	0.84[ASN][1000 genomes]
rs73438937	0.85[ASN][1000 genomes]
rs73438941	0.85[ASN][1000 genomes]
rs73438962	0.85[ASN][1000 genomes]
rs73455410	0.99[ASN][1000 genomes]
rs73455413	0.99[ASN][1000 genomes]
rs73455451	0.96[ASN][1000 genomes]
rs7495630	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7495911	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs750214	1.00[JPT][hapmap]
rs7757	1.00[JPT][hapmap]
rs8023669	1.00[JPT][hapmap]
rs8027193	0.87[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs8027577	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8031723	0.94[CEU][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs8035810	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8037783	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs8038486	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8040998	0.90[JPT][hapmap]
rs8043224	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9646239	1.00[JPT][hapmap]
rs965263	1.00[CEU][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs965264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9707895	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11852496	C15orf40	cis	parietal	SCAN

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83777200-83834600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:83781200-83827200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:83782000-83825000	Weak transcription	Psoas Muscle	Psoas
4	chr15:83782600-83833600	Weak transcription	Right Ventricle	heart
5	chr15:83783800-83832400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr15:83792800-83835200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:83794600-83827400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:83796200-83826800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr15:83796200-83832000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:83796400-83833000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr15:83797600-83831800	Weak transcription	Fetal Thymus	thymus
12	chr15:83797800-83832800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:83799000-83827200	Weak transcription	Gastric	stomach
14	chr15:83799600-83826000	Weak transcription	NHEK	skin
15	chr15:83799800-83819200	Weak transcription	NHDF-Ad	bronchial
16	chr15:83800000-83818200	Weak transcription	Placenta	Placenta
17	chr15:83800000-83830000	Weak transcription	Fetal Heart	heart
18	chr15:83800800-83818600	Weak transcription	Primary B cells from cord blood	blood
19	chr15:83802400-83826600	Weak transcription	Hela-S3	cervix
20	chr15:83802800-83818000	Weak transcription	HMEC	breast
21	chr15:83802800-83829800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr15:83803400-83821200	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr15:83804200-83819000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr15:83806400-83820600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:83807000-83821200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr15:83807200-83817800	Weak transcription	Osteobl	bone
27	chr15:83808000-83835600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr15:83808200-83820000	Weak transcription	NHLF	lung
29	chr15:83808200-83821000	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr15:83809600-83820400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr15:83809600-83820600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr15:83809600-83820800	Strong transcription	Fetal Brain Female	brain
33	chr15:83809600-83825400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr15:83810000-83820600	Strong transcription	H1 Cell Line	embryonic stem cell
35	chr15:83811200-83820800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr15:83811800-83821000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr15:83812200-83820400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr15:83812200-83820600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:83812200-83820800	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr15:83812200-83821000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:83812400-83819200	Strong transcription	HSMMtube	muscle
42	chr15:83812400-83820400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr15:83812400-83820800	Strong transcription	Brain Germinal Matrix	brain
44	chr15:83812600-83832800	Weak transcription	Small Intestine	intestine
45	chr15:83813400-83818000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr15:83813400-83818000	Weak transcription	Brain Anterior Caudate	brain
47	chr15:83813400-83820200	Weak transcription	Spleen	Spleen
48	chr15:83813400-83827400	Weak transcription	Fetal Intestine Small	intestine
49	chr15:83813400-83832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr15:83813400-83833600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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