Variant report

Variant	rs58281154
Chromosome Location	chr15:83779683-83779684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:83778623..83780612-chr15:83786049..83788468,2	K562	blood:
2	chr15:83777740..83781567-chr15:83783263..83786281,3	MCF-7	breast:
3	chr15:83775374..83777785-chr15:83779584..83782378,2	MCF-7	breast:
4	chr15:83768366..83770351-chr15:83779255..83781132,2	K562	blood:
5	chr15:83731812..83734557-chr15:83779300..83781603,2	K562	blood:
6	chr15:83731075..83738271-chr15:83771545..83781798,12	K562	blood:
7	chr15:83778623..83781494-chr15:83786049..83787627,2	K562	blood:
8	chr15:83734114..83735932-chr15:83779547..83781078,2	MCF-7	breast:
9	chr15:83778107..83780682-chr15:83782930..83785296,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000136404	Chromatin interaction
ENSG00000263643	Chromatin interaction
ENSG00000260579	Chromatin interaction
ENSG00000064726	Chromatin interaction

Extended variants
information (count: 173 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:172)

rs_ID	r²[population]
rs10520576	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1075619	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1112404	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11259903	0.90[ASN][1000 genomes]
rs11259905	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11259906	0.85[ASN][1000 genomes]
rs11259965	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11259967	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11259968	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11259969	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11259970	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11852287	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11852408	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11852446	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11852496	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11853498	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11853742	0.85[ASN][1000 genomes]
rs11853977	0.84[ASN][1000 genomes]
rs11854520	0.85[ASN][1000 genomes]
rs11854888	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11855639	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11856000	0.90[ASN][1000 genomes]
rs11856164	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11856171	0.96[ASN][1000 genomes]
rs11856806	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11857428	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11857641	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11857878	0.82[ASN][1000 genomes]
rs11858162	0.85[EUR][1000 genomes]
rs11858377	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11858468	0.83[EUR][1000 genomes]
rs12437558	0.85[EUR][1000 genomes]
rs12437858	0.83[EUR][1000 genomes]
rs12437901	0.85[EUR][1000 genomes]
rs12438398	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12438526	0.81[EUR][1000 genomes]
rs12438575	0.85[EUR][1000 genomes]
rs12438708	0.81[EUR][1000 genomes]
rs12439122	0.82[EUR][1000 genomes]
rs12439903	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12440265	0.85[EUR][1000 genomes]
rs12440386	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12440562	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12441006	0.85[EUR][1000 genomes]
rs12441409	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12441575	0.85[EUR][1000 genomes]
rs12441585	0.99[ASN][1000 genomes]
rs12441847	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12442572	0.90[ASN][1000 genomes]
rs12443109	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12443424	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12591855	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12593316	0.82[ASN][1000 genomes]
rs12593532	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12593638	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12594496	0.94[ASN][1000 genomes]
rs12595330	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17158080	0.99[ASN][1000 genomes]
rs17361375	0.85[EUR][1000 genomes]
rs17507693	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17507763	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17508610	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17509233	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17567151	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17567869	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17568298	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17568459	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1880532	0.80[EUR][1000 genomes]
rs1901544	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2034617	0.99[ASN][1000 genomes]
rs2034618	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2167600	0.83[ASN][1000 genomes]
rs28373753	0.96[ASN][1000 genomes]
rs28436027	0.96[ASN][1000 genomes]
rs28538218	0.86[ASN][1000 genomes]
rs28623260	0.96[ASN][1000 genomes]
rs28625676	0.90[ASN][1000 genomes]
rs28678434	0.82[ASN][1000 genomes]
rs28754750	0.99[ASN][1000 genomes]
rs4341707	0.82[ASN][1000 genomes]
rs4386103	0.82[ASN][1000 genomes]
rs4389108	0.82[ASN][1000 genomes]
rs4408505	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4423388	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4480763	0.84[EUR][1000 genomes]
rs4531702	0.82[ASN][1000 genomes]
rs4563011	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4572349	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55683536	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55756182	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55878453	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55893521	0.82[EUR][1000 genomes]
rs55905779	0.81[EUR][1000 genomes]
rs55932429	0.81[EUR][1000 genomes]
rs56045305	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56052029	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56352317	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56391827	0.94[ASN][1000 genomes]
rs57219675	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57729044	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58006707	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58292616	0.94[ASN][1000 genomes]
rs58329615	0.87[ASN][1000 genomes]
rs59896565	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60344060	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60819629	0.85[EUR][1000 genomes]
rs60935326	0.97[ASN][1000 genomes]
rs61267530	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61323939	0.94[ASN][1000 genomes]
rs62010162	0.83[EUR][1000 genomes]
rs62010164	0.85[EUR][1000 genomes]
rs62010165	0.85[EUR][1000 genomes]
rs62010166	0.85[EUR][1000 genomes]
rs62010170	0.82[EUR][1000 genomes]
rs62010172	0.81[EUR][1000 genomes]
rs62010173	0.85[EUR][1000 genomes]
rs62010174	0.83[EUR][1000 genomes]
rs62010175	0.85[EUR][1000 genomes]
rs62010177	0.83[EUR][1000 genomes]
rs62010212	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62010214	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62010215	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62010220	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62010248	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62010252	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62010254	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62010255	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62010258	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62011869	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62025914	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62025915	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62025919	0.81[EUR][1000 genomes]
rs62025921	0.81[EUR][1000 genomes]
rs6602970	0.85[ASN][1000 genomes]
rs6603047	1.00[ASN][1000 genomes]
rs66603627	0.86[ASN][1000 genomes]
rs66619192	0.85[EUR][1000 genomes]
rs66757932	0.83[EUR][1000 genomes]
rs66982382	0.86[ASN][1000 genomes]
rs67933024	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7164083	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7165114	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7165978	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7172590	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7173166	0.85[ASN][1000 genomes]
rs7180407	0.85[ASN][1000 genomes]
rs7180692	0.82[EUR][1000 genomes]
rs72755992	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73437314	0.94[ASN][1000 genomes]
rs73437324	0.94[ASN][1000 genomes]
rs73437329	0.94[ASN][1000 genomes]
rs73437330	0.94[ASN][1000 genomes]
rs73438913	0.89[ASN][1000 genomes]
rs73438921	0.82[ASN][1000 genomes]
rs73438937	0.84[ASN][1000 genomes]
rs73438941	0.84[ASN][1000 genomes]
rs73438962	0.84[ASN][1000 genomes]
rs73455410	0.97[ASN][1000 genomes]
rs73455413	0.97[ASN][1000 genomes]
rs73455451	0.94[ASN][1000 genomes]
rs7495630	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7495911	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8027193	0.90[ASN][1000 genomes]
rs8027577	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8031723	0.85[EUR][1000 genomes]
rs8035810	0.99[ASN][1000 genomes]
rs8037783	1.00[ASN][1000 genomes]
rs8038486	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8043224	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs965263	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs965264	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9707895	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83776800-83781800	Weak transcription	Gastric	stomach
2	chr15:83777000-83781800	Weak transcription	Aorta	Aorta
3	chr15:83777200-83798400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr15:83777200-83834600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:83777600-83780800	Weak transcription	Right Atrium	heart
6	chr15:83777600-83781000	Weak transcription	Right Ventricle	heart
7	chr15:83777600-83781400	Weak transcription	Psoas Muscle	Psoas
8	chr15:83777600-83786800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:83777800-83780600	Weak transcription	NHLF	lung
10	chr15:83777800-83780800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr15:83777800-83781000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr15:83777800-83782800	Weak transcription	HSMM	muscle
13	chr15:83777800-83783600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:83777800-83798800	Weak transcription	HSMMtube	muscle
15	chr15:83778000-83782200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:83778000-83784200	Weak transcription	GM12878-XiMat	blood
17	chr15:83778200-83781000	Weak transcription	K562	blood
18	chr15:83778200-83781200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr15:83778200-83781200	Enhancers	HUVEC	blood vessel
20	chr15:83778200-83801600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr15:83778200-83806400	Weak transcription	Dnd41	blood
22	chr15:83778400-83780800	Weak transcription	Spleen	Spleen
23	chr15:83778400-83782000	Weak transcription	Fetal Brain Female	brain
24	chr15:83778400-83782600	Weak transcription	Primary B cells from cord blood	blood
25	chr15:83778600-83782800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr15:83778600-83782800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr15:83778600-83797600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr15:83778800-83780800	Weak transcription	Left Ventricle	heart
29	chr15:83778800-83799000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr15:83779000-83781000	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr15:83779200-83781200	Weak transcription	Fetal Muscle Leg	muscle
32	chr15:83779400-83779800	Weak transcription	Colonic Mucosa	Colon
33	chr15:83779400-83780800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr15:83779400-83781200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr15:83779400-83781800	Weak transcription	Brain Hippocampus Middle	brain
36	chr15:83779400-83782000	Weak transcription	Esophagus	oesophagus
37	chr15:83779400-83782800	Weak transcription	Brain Germinal Matrix	brain
38	chr15:83779400-83812800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr15:83779600-83780000	Weak transcription	Lung	lung
40	chr15:83779600-83780400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr15:83779600-83781000	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr15:83779600-83781400	Weak transcription	Primary monocytes fromperipheralblood	blood

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