Variant report

Variant	rs62010214
Chromosome Location	chr15:83812085-83812086
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 179 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:178)

rs_ID	r²[population]
rs10520576	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1075619	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1112404	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11259903	0.92[ASN][1000 genomes]
rs11259905	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11259906	0.86[ASN][1000 genomes]
rs11259965	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11259967	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11259968	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11259969	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11259970	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11852287	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11852408	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11852446	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11852496	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11853498	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11853742	0.83[ASN][1000 genomes]
rs11853977	0.85[ASN][1000 genomes]
rs11854520	0.86[ASN][1000 genomes]
rs11854888	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11855639	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11856000	0.92[ASN][1000 genomes]
rs11856164	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11856171	0.97[ASN][1000 genomes]
rs11856806	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11857428	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11857641	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11857878	0.83[ASN][1000 genomes]
rs11858162	0.83[EUR][1000 genomes]
rs11858377	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11858468	0.82[EUR][1000 genomes]
rs12437558	0.83[EUR][1000 genomes]
rs12437858	0.82[EUR][1000 genomes]
rs12437901	0.83[EUR][1000 genomes]
rs12438398	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438526	0.82[EUR][1000 genomes]
rs12438575	0.83[EUR][1000 genomes]
rs12438708	0.82[EUR][1000 genomes]
rs12439122	0.84[EUR][1000 genomes]
rs12439903	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12440265	0.83[EUR][1000 genomes]
rs12440386	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12440562	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12441006	0.83[EUR][1000 genomes]
rs12441409	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12441575	0.83[EUR][1000 genomes]
rs12441585	1.00[ASN][1000 genomes]
rs12441847	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12442572	0.92[ASN][1000 genomes]
rs12443109	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12443424	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12591855	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12593316	0.80[ASN][1000 genomes]
rs12593532	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12593638	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12594496	0.96[ASN][1000 genomes]
rs12595330	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17158080	1.00[ASN][1000 genomes]
rs17361375	0.83[EUR][1000 genomes]
rs17507693	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17507763	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17508610	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17509233	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17567151	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17567869	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17568298	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17568459	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1880532	0.82[EUR][1000 genomes]
rs1901544	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2034617	1.00[ASN][1000 genomes]
rs2034618	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2084839	0.80[ASN][1000 genomes]
rs2167600	0.84[ASN][1000 genomes]
rs28373753	0.97[ASN][1000 genomes]
rs28436027	0.94[ASN][1000 genomes]
rs28538218	0.84[ASN][1000 genomes]
rs28623260	0.97[ASN][1000 genomes]
rs28625676	0.92[ASN][1000 genomes]
rs28678434	0.84[ASN][1000 genomes]
rs28754750	1.00[ASN][1000 genomes]
rs4300612	0.81[AMR][1000 genomes]
rs4341707	0.84[ASN][1000 genomes]
rs4386103	0.84[ASN][1000 genomes]
rs4389108	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4408505	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4423388	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4480763	0.85[EUR][1000 genomes]
rs4531702	0.84[ASN][1000 genomes]
rs4547301	0.81[AMR][1000 genomes]
rs4563011	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4572349	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55683536	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55756182	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55878453	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55893521	0.84[EUR][1000 genomes]
rs55905779	0.82[EUR][1000 genomes]
rs55932429	0.82[EUR][1000 genomes]
rs56045305	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56052029	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56352317	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56391827	0.93[ASN][1000 genomes]
rs57219675	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57729044	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58006707	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58281154	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58292616	0.96[ASN][1000 genomes]
rs58329615	0.86[ASN][1000 genomes]
rs58847484	0.81[EUR][1000 genomes]
rs59828448	0.80[EUR][1000 genomes]
rs59896565	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60344060	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60819629	0.83[EUR][1000 genomes]
rs60935326	0.99[ASN][1000 genomes]
rs61267530	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61323939	0.93[ASN][1000 genomes]
rs62010162	0.82[EUR][1000 genomes]
rs62010164	0.83[EUR][1000 genomes]
rs62010165	0.83[EUR][1000 genomes]
rs62010166	0.83[EUR][1000 genomes]
rs62010170	0.81[EUR][1000 genomes]
rs62010173	0.83[EUR][1000 genomes]
rs62010174	0.82[EUR][1000 genomes]
rs62010175	0.83[EUR][1000 genomes]
rs62010177	0.82[EUR][1000 genomes]
rs62010212	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010215	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62010220	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62010248	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62010252	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62010254	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62010255	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62010258	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62011869	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62025861	0.81[AMR][1000 genomes]
rs62025914	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62025915	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62025919	0.82[EUR][1000 genomes]
rs62025921	0.82[EUR][1000 genomes]
rs6602970	0.86[ASN][1000 genomes]
rs6603047	0.99[ASN][1000 genomes]
rs66603627	0.85[ASN][1000 genomes]
rs66619192	0.83[EUR][1000 genomes]
rs66757932	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66982382	0.85[ASN][1000 genomes]
rs67933024	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7164083	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7165114	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7165978	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7172590	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7173166	0.86[ASN][1000 genomes]
rs7179675	0.81[EUR][1000 genomes]
rs7180407	0.86[ASN][1000 genomes]
rs7180692	0.84[EUR][1000 genomes]
rs72755992	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73437314	0.96[ASN][1000 genomes]
rs73437324	0.96[ASN][1000 genomes]
rs73437329	0.96[ASN][1000 genomes]
rs73437330	0.96[ASN][1000 genomes]
rs73438913	0.90[ASN][1000 genomes]
rs73438921	0.84[ASN][1000 genomes]
rs73438937	0.85[ASN][1000 genomes]
rs73438941	0.85[ASN][1000 genomes]
rs73438962	0.85[ASN][1000 genomes]
rs73455410	0.99[ASN][1000 genomes]
rs73455413	0.99[ASN][1000 genomes]
rs73455451	0.96[ASN][1000 genomes]
rs7495630	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7495911	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8027193	0.92[ASN][1000 genomes]
rs8027577	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8031723	0.83[EUR][1000 genomes]
rs8035810	1.00[ASN][1000 genomes]
rs8037783	0.99[ASN][1000 genomes]
rs8038486	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8043224	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965263	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs965264	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9707895	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83777200-83834600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:83779400-83812800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr15:83781200-83827200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr15:83782000-83825000	Weak transcription	Psoas Muscle	Psoas
5	chr15:83782200-83812400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr15:83782600-83833600	Weak transcription	Right Ventricle	heart
7	chr15:83783200-83812400	Weak transcription	Brain Angular Gyrus	brain
8	chr15:83783200-83812800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:83783400-83812800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr15:83783800-83832400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr15:83787000-83812200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:83788600-83815000	Weak transcription	Pancreas	Pancrea
13	chr15:83791600-83813400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr15:83792800-83835200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr15:83793800-83812400	Weak transcription	Thymus	Thymus
16	chr15:83794600-83827400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr15:83796200-83812400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr15:83796200-83826800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr15:83796200-83832000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:83796400-83812200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:83796400-83833000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr15:83797200-83812400	Weak transcription	Primary T cells from cord blood	blood
23	chr15:83797600-83831800	Weak transcription	Fetal Thymus	thymus
24	chr15:83797800-83832800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr15:83798600-83812400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr15:83799000-83827200	Weak transcription	Gastric	stomach
27	chr15:83799200-83812200	Weak transcription	Fetal Intestine Large	intestine
28	chr15:83799400-83812200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr15:83799400-83812200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr15:83799400-83812400	Weak transcription	Spleen	Spleen
31	chr15:83799600-83812400	Weak transcription	Ovary	ovary
32	chr15:83799600-83813000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr15:83799600-83826000	Weak transcription	NHEK	skin
34	chr15:83799800-83819200	Weak transcription	NHDF-Ad	bronchial
35	chr15:83800000-83818200	Weak transcription	Placenta	Placenta
36	chr15:83800000-83830000	Weak transcription	Fetal Heart	heart
37	chr15:83800200-83812400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr15:83800400-83812200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:83800800-83818600	Weak transcription	Primary B cells from cord blood	blood
40	chr15:83801400-83812200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:83801400-83812200	Weak transcription	Aorta	Aorta
42	chr15:83802000-83812200	Weak transcription	Brain Hippocampus Middle	brain
43	chr15:83802200-83815000	Weak transcription	Primary hematopoietic stem cells	blood
44	chr15:83802400-83826600	Weak transcription	Hela-S3	cervix
45	chr15:83802600-83812400	Weak transcription	HSMMtube	muscle
46	chr15:83802800-83818000	Weak transcription	HMEC	breast
47	chr15:83802800-83829800	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr15:83803400-83821200	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr15:83803600-83812800	Weak transcription	Lung	lung
50	chr15:83803800-83813200	Weak transcription	K562	blood

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