Variant report

Variant	rs62010215
Chromosome Location	chr15:83831426-83831427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83824239..83826834-chr15:83830825..83833797,3	MCF-7	breast:
2	chr15:83825010..83827114-chr15:83828912..83832901,4	K562	blood:
3	chr15:83827156..83829042-chr15:83830149..83833522,4	K562	blood:

Variant related genes	Relation type
ENSG00000166503	Chromatin interaction

Extended variants
information (count: 176 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:175)

rs_ID	r²[population]
rs10520576	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1075619	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1112404	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11259903	0.95[ASN][1000 genomes]
rs11259905	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11259906	0.89[ASN][1000 genomes]
rs11259965	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11259967	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11259968	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11259969	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11259970	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11852287	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11852408	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11852446	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11852496	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11853498	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11853742	0.80[ASN][1000 genomes]
rs11853977	0.88[ASN][1000 genomes]
rs11854520	0.89[ASN][1000 genomes]
rs11854888	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11855639	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11856000	0.94[ASN][1000 genomes]
rs11856164	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11856171	0.94[ASN][1000 genomes]
rs11856806	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857428	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11857641	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857878	0.86[ASN][1000 genomes]
rs11858162	0.85[EUR][1000 genomes]
rs11858377	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11858468	0.83[EUR][1000 genomes]
rs12437558	0.85[EUR][1000 genomes]
rs12437858	0.83[EUR][1000 genomes]
rs12437901	0.85[EUR][1000 genomes]
rs12438398	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12438526	0.84[EUR][1000 genomes]
rs12438575	0.85[EUR][1000 genomes]
rs12438708	0.84[EUR][1000 genomes]
rs12439122	0.85[EUR][1000 genomes]
rs12439903	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12440265	0.85[EUR][1000 genomes]
rs12440386	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12440562	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12441006	0.85[EUR][1000 genomes]
rs12441409	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12441575	0.85[EUR][1000 genomes]
rs12441585	0.97[ASN][1000 genomes]
rs12441847	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12442572	0.95[ASN][1000 genomes]
rs12443109	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12443424	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12591855	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12593532	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12593638	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12594496	0.99[ASN][1000 genomes]
rs12595330	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17158080	0.97[ASN][1000 genomes]
rs17361375	0.85[EUR][1000 genomes]
rs17507693	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17507763	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17508610	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17509233	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17567151	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17567869	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17568298	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17568459	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880532	0.83[EUR][1000 genomes]
rs1901544	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2034617	0.97[ASN][1000 genomes]
rs2034618	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2167600	0.82[ASN][1000 genomes]
rs28373753	1.00[ASN][1000 genomes]
rs28436027	0.92[ASN][1000 genomes]
rs28538218	0.82[ASN][1000 genomes]
rs28623260	1.00[ASN][1000 genomes]
rs28625676	0.95[ASN][1000 genomes]
rs28678434	0.86[ASN][1000 genomes]
rs28754750	0.97[ASN][1000 genomes]
rs4341707	0.86[ASN][1000 genomes]
rs4386103	0.86[ASN][1000 genomes]
rs4389108	0.86[ASN][1000 genomes]
rs4408505	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4423388	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4480763	0.87[EUR][1000 genomes]
rs4531702	0.86[ASN][1000 genomes]
rs4563011	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4572349	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55683536	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55756182	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55878453	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55893521	0.85[EUR][1000 genomes]
rs55905779	0.84[EUR][1000 genomes]
rs55932429	0.84[EUR][1000 genomes]
rs56045305	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56052029	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56352317	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56391827	0.90[ASN][1000 genomes]
rs57219675	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57729044	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58006707	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58281154	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58292616	0.99[ASN][1000 genomes]
rs58329615	0.83[ASN][1000 genomes]
rs58847484	0.82[EUR][1000 genomes]
rs59828448	0.81[EUR][1000 genomes]
rs59896565	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60344060	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60819629	0.85[EUR][1000 genomes]
rs60935326	0.96[ASN][1000 genomes]
rs61267530	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61323939	0.90[ASN][1000 genomes]
rs62010162	0.83[EUR][1000 genomes]
rs62010164	0.85[EUR][1000 genomes]
rs62010165	0.85[EUR][1000 genomes]
rs62010166	0.85[EUR][1000 genomes]
rs62010170	0.82[EUR][1000 genomes]
rs62010172	0.81[EUR][1000 genomes]
rs62010173	0.85[EUR][1000 genomes]
rs62010174	0.83[EUR][1000 genomes]
rs62010175	0.85[EUR][1000 genomes]
rs62010177	0.83[EUR][1000 genomes]
rs62010212	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62010214	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62010220	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62010248	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010252	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62010254	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62010255	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62010258	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62011869	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62025914	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62025915	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62025919	0.84[EUR][1000 genomes]
rs62025921	0.84[EUR][1000 genomes]
rs62025923	0.81[EUR][1000 genomes]
rs6602970	0.89[ASN][1000 genomes]
rs6603047	0.96[ASN][1000 genomes]
rs66603627	0.82[ASN][1000 genomes]
rs66619192	0.85[EUR][1000 genomes]
rs66757932	0.83[EUR][1000 genomes]
rs66982382	0.82[ASN][1000 genomes]
rs67933024	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7164083	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165114	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165978	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7172590	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7173166	0.89[ASN][1000 genomes]
rs7179675	0.83[EUR][1000 genomes]
rs7180407	0.89[ASN][1000 genomes]
rs7180692	0.85[EUR][1000 genomes]
rs72755992	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73437314	0.99[ASN][1000 genomes]
rs73437324	0.99[ASN][1000 genomes]
rs73437329	0.99[ASN][1000 genomes]
rs73437330	0.99[ASN][1000 genomes]
rs73438913	0.93[ASN][1000 genomes]
rs73438921	0.86[ASN][1000 genomes]
rs73438937	0.88[ASN][1000 genomes]
rs73438941	0.88[ASN][1000 genomes]
rs73438962	0.88[ASN][1000 genomes]
rs73455410	0.96[ASN][1000 genomes]
rs73455413	0.96[ASN][1000 genomes]
rs73455451	0.99[ASN][1000 genomes]
rs7495630	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7495911	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027193	0.95[ASN][1000 genomes]
rs8027577	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8031723	0.85[EUR][1000 genomes]
rs8035810	0.97[ASN][1000 genomes]
rs8037783	0.96[ASN][1000 genomes]
rs8038486	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8043224	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs965263	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs965264	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9707895	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83777200-83834600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:83782600-83833600	Weak transcription	Right Ventricle	heart
3	chr15:83783800-83832400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr15:83792800-83835200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr15:83796200-83832000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:83796400-83833000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:83797600-83831800	Weak transcription	Fetal Thymus	thymus
8	chr15:83797800-83832800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr15:83808000-83835600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:83812600-83832800	Weak transcription	Small Intestine	intestine
11	chr15:83813400-83832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:83813400-83833600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:83813800-83833800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr15:83818600-83835200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr15:83818800-83835400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr15:83819000-83832200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:83819000-83833800	Weak transcription	Brain Angular Gyrus	brain
18	chr15:83819200-83831600	Weak transcription	HSMMtube	muscle
19	chr15:83819800-83835000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr15:83820800-83833600	Weak transcription	Osteobl	bone
21	chr15:83820800-83834800	Weak transcription	Fetal Intestine Large	intestine
22	chr15:83821000-83834600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr15:83822000-83832600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr15:83823000-83833400	Weak transcription	NHLF	lung
25	chr15:83823200-83832800	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr15:83823400-83832800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr15:83825200-83832200	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr15:83825200-83833800	Weak transcription	Brain Substantia Nigra	brain
29	chr15:83825400-83832200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
30	chr15:83825600-83834800	Weak transcription	Psoas Muscle	Psoas
31	chr15:83825800-83833800	Weak transcription	Aorta	Aorta
32	chr15:83825800-83834000	Weak transcription	Fetal Stomach	stomach
33	chr15:83825800-83835400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:83825800-83847200	Weak transcription	Left Ventricle	heart
35	chr15:83826000-83832600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr15:83826000-83833800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr15:83826000-83833800	Weak transcription	Brain Anterior Caudate	brain
38	chr15:83826000-83836200	Weak transcription	Colon Smooth Muscle	Colon
39	chr15:83826200-83831800	Weak transcription	Brain Germinal Matrix	brain
40	chr15:83826200-83832000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr15:83826200-83833600	Weak transcription	Fetal Brain Male	brain
42	chr15:83826400-83831600	Weak transcription	Fetal Kidney	kidney
43	chr15:83826400-83833200	Weak transcription	NHDF-Ad	bronchial
44	chr15:83826400-83833400	Weak transcription	Fetal Muscle Trunk	muscle
45	chr15:83826400-83833800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr15:83826400-83834600	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr15:83826600-83833200	Weak transcription	NHEK	skin
48	chr15:83826800-83831600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr15:83826800-83831800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr15:83826800-83832200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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