Variant report

Variant	rs17361375
Chromosome Location	chr15:83680329-83680330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:542)
CpG islands
(count:61)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:542 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr15:83679368-83680879	K562	blood:	n/a	n/a
2	ARID3A	chr15:83680271-83680471	HepG2	liver:	n/a	n/a
3	RAD21	chr15:83680204-83680632	H1-hESC	embryonic stem cell:	n/a	n/a
4	GTF2F1	chr15:83680197-83681061	K562	blood:	n/a	n/a
5	GABPA	chr15:83680217-83680610	H1-hESC	embryonic stem cell:	n/a	chr15:83680388-83680402 chr15:83680391-83680402 chr15:83680393-83680402 chr15:83680391-83680405
6	GABPA	chr15:83679631-83680897	A549	lung:	n/a	chr15:83680388-83680402 chr15:83680391-83680402 chr15:83680393-83680402 chr15:83680391-83680405
7	MAX	chr15:83679626-83680949	MCF-7	breast:	n/a	n/a
8	RAD21	chr15:83680291-83680692	Hela-S3	cervix:	n/a	n/a
9	CEBPD	chr15:83680180-83680691	K562	blood:	n/a	n/a
10	BCL3	chr15:83680095-83681014	A549	lung:	n/a	n/a
11	CTCF	chr15:83680305-83680646	GM19238	blood:	n/a	n/a
12	STAT1	chr15:83680137-83680936	GM12878	blood:	n/a	chr15:83680646-83680660
13	YY1	chr15:83679558-83680673	SK-N-SH_RA	brain:	n/a	n/a
14	POLR2A	chr15:83678960-83682105	GM12891	blood:	n/a	n/a
15	STAT5A	chr15:83680248-83680801	K562	blood:	n/a	chr15:83680646-83680660
16	E2F4	chr15:83680141-83680806	K562	blood:	n/a	chr15:83680392-83680401
17	CTCF	chr15:83680320-83680470	HAc	cerebellar:	n/a	n/a
18	CBX3	chr15:83680286-83681010	K562	blood:	n/a	n/a
19	POLR2A	chr15:83679681-83680799	ProgFib	skin:	n/a	n/a
20	SP2	chr15:83680223-83680572	K562	blood:	n/a	n/a
21	POLR2A	chr15:83679662-83680819	NB4	blood:	n/a	n/a
22	MAX	chr15:83679584-83680980	GM12878	blood:	n/a	n/a
23	ZNF143	chr15:83679590-83680657	H1-hESC	embryonic stem cell:	n/a	chr15:83680423-83680433
24	CTCF	chr15:83680215-83680667	T-47D	breast:	n/a	n/a
25	RELA	chr15:83679597-83681036	GM18951	blood:	n/a	n/a
26	SMC3	chr15:83680259-83680808	K562	blood:	n/a	n/a
27	POLR2A	chr15:83679488-83681032	HUVEC	blood vessel:	n/a	n/a
28	SIN3AK20	chr15:83679488-83680870	A549	lung:	n/a	n/a
29	CTCF	chr15:83680263-83680600	K562	blood:	n/a	n/a
30	RAD21	chr15:83679419-83680715	IMR90	lung:	n/a	n/a
31	TAF1	chr15:83680100-83680818	K562	blood:	n/a	n/a
32	RCOR1	chr15:83680256-83680983	GM12878	blood:	n/a	n/a
33	RCOR1	chr15:83679627-83680777	HepG2	liver:	n/a	n/a
34	TCF7L2	chr15:83680161-83680805	PANC-1	pancreas:	n/a	n/a
35	POLR2A	chr15:83679762-83680935	GM12892	blood:	n/a	n/a
36	SP2	chr15:83680097-83680697	HepG2	liver:	n/a	n/a
37	POLR2A	chr15:83679685-83680870	GM12878	blood:	n/a	n/a
38	TBP	chr15:83680223-83680692	Hela-S3	cervix:	n/a	n/a
39	TAF1	chr15:83679581-83680809	ECC-1	luminal epithelium:	n/a	n/a
40	POLR2A	chr15:83679670-83680946	GM12891	blood:	n/a	n/a
41	SMC3	chr15:83679550-83680906	GM12878	blood:	n/a	n/a
42	MYC	chr15:83679606-83680733	Hela-S3	cervix:	n/a	n/a
43	POLR2A	chr15:83679525-83681003	PFSK-1	brain:	n/a	n/a
44	CTCF	chr15:83679502-83680761	GM12878	blood:	n/a	n/a
45	SETDB1	chr15:83679757-83681170	K562	blood:	n/a	chr15:83680392-83680401
46	ELF1	chr15:83680067-83680850	A549	lung:	n/a	n/a
47	MAX	chr15:83680184-83680902	HepG2	liver:	n/a	n/a
48	SP1	chr15:83679488-83680886	A549	lung:	n/a	n/a
49	HEY1	chr15:83680081-83681156	K562	blood:	n/a	n/a
50	CTCF	chr15:83680206-83680656	T-47D	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:83680325-83680375	Hepatocyte	liver:	n/a
2	chr15:83680325-83680375	HRPEpiC	eye:	n/a
3	chr15:83680325-83680375	ECC-1	luminal epithelium:	n/a
4	chr15:83680325-83680375	HEK293	kidney:	embryo
5	chr15:83680325-83680375	K562	blood:	n/a
6	chr15:83680325-83680375	HRE	kidney:	n/a
7	chr15:83680325-83680375	HMEC	breast:	n/a
8	chr15:83680325-83680375	SK-N-MC	brain:	n/a
9	chr15:83680325-83680375	AoSMC	blood vessel:	n/a
10	chr15:83680325-83680375	HepG2	liver:	n/a
11	chr15:83680325-83680375	NH-A	brain:	n/a
12	chr15:83680325-83680375	SK-N-SH	brain:	n/a
13	chr15:83680325-83680375	Hela-S3	cervix:	n/a
14	chr15:83680325-83680375	H1-hESC	embryonic stem cell:	embryo
15	chr15:83680325-83680375	GM06990	blood:	n/a
16	chr15:83680325-83680375	HPAEpiC	pulmonary alveolar:	n/a
17	chr15:83680325-83680375	HEEpiC	esophagus:	n/a
18	chr15:83680325-83680375	NB4	blood:	n/a
19	chr15:83680325-83680375	RPTEC	kidney:	n/a
20	chr15:83680325-83680375	MCF-7	breast:	n/a
21	chr15:83680325-83680375	HAEpiC	amniotic membrane:	n/a
22	chr15:83680325-83680375	ProgFib	skin:	n/a
23	chr15:83680325-83680375	AG04449	skin:	fetal
24	chr15:83680325-83680375	HCT-116	colon:	n/a
25	chr15:83680325-83680375	A549	lung:	n/a
26	chr15:83680325-83680375	Jurkat	blood:	n/a
27	chr15:83680325-83680375	HUVEC	blood vessel:	n/a
28	chr15:83680325-83680375	AG04450	lung:	fetal
29	chr15:83680325-83680375	PrEC	prostate:	n/a
30	chr15:83680325-83680375	BJ	skin:	n/a
31	chr15:83680325-83680375	IMR90	lung:	fetal
32	chr15:83680325-83680375	HCM	heart:	n/a
33	chr15:83680325-83680375	PANC-1	pancreas:	n/a
34	chr15:83680325-83680375	HCF	heart:	n/a
35	chr15:83680325-83680375	PFSK-1	brain:	n/a
36	chr15:83680325-83680375	MCF10A-Er-Src	breast:	n/a
37	chr15:83680325-83680375	BE2_C	brain:	n/a
38	chr15:83680325-83680375	LNCaP	prostate:	n/a
39	chr15:83680325-83680375	HRCEpiC	kidney:	n/a
40	chr15:83680325-83680375	ovcar-3	ovarian:	n/a
41	chr15:83680325-83680375	AG09309	skin:	n/a
42	chr15:83680325-83680375	U87	brain:	n/a
43	chr15:83680325-83680375	HCPEpiC	choroid plexus:	n/a
44	chr15:83680325-83680375	SK-N-SH_RA	brain:	n/a
45	chr15:83680325-83680375	NHDF-neo	bronchial:	n/a
46	chr15:83680325-83680375	HNPCEpiC	eye:	n/a
47	chr15:83680325-83680375	Caco-2	colon:	n/a
48	chr15:83680325-83680375	T-47D	breast:	n/a
49	chr15:83680325-83680375	AG09319	gingival:	n/a
50	chr15:83680325-83680375	GM12892	blood:	n/a

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:83678535..83684480-chr15:83731660..83738533,12	MCF-7	breast:
2	chr15:83516928..83520058-chr15:83678480..83682741,4	K562	blood:
3	chr15:83679004..83681789-chr15:83733343..83738150,8	MCF-7	breast:
4	chr15:83348285..83351278-chr15:83678934..83682211,3	MCF-7	breast:
5	chr15:83679195..83681271-chr15:83795082..83797349,2	K562	blood:
6	chr15:83418143..83420234-chr15:83679510..83682009,2	K562	blood:
7	chr15:83678614..83685168-chr15:83874398..83879059,12	MCF-7	breast:
8	chr15:83679523..83682277-chr15:83776010..83777597,2	K562	blood:
9	chr15:83417632..83419477-chr15:83677725..83680505,2	MCF-7	breast:
10	chr15:83679205..83686226-chr15:83733349..83739878,12	K562	blood:
11	chr15:83654223..83656996-chr15:83678905..83681492,4	MCF-7	breast:
12	chr15:83679499..83683217-chr15:83687466..83692124,6	K562	blood:
13	chr14:34419671..34420196-chr15:83680007..83680593,2	Hela-S3	cervix:
14	chr15:83314747..83316448-chr15:83680031..83681739,2	K562	blood:
15	chr15:83678350..83680791-chr15:83692946..83695679,3	MCF-7	breast:
16	chr15:83678946..83682301-chr15:83733959..83737732,7	K562	blood:
17	chr15:83678260..83683197-chr15:83874959..83878158,5	K562	blood:
18	chr15:83678154..83684518-chr15:83871554..83879371,12	MCF-7	breast:
19	chr15:83679404..83681095-chr21:46492672..46494798,2	MCF-7	breast:
20	chr15:83475882..83480852-chr15:83678880..83683242,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000260608	TF binding region
ENSG00000249214	TF binding region
C15orf40	TF binding region
ENSG00000260608	CpG island
C15orf40	CpG island
ENSG00000249214	CpG island
ENSG00000166503	Chromatin interaction
ENSG00000250988	Chromatin interaction
ENSG00000129521	Chromatin interaction
ENSG00000103942	Chromatin interaction
ENSG00000268856	Chromatin interaction
ENSG00000235374	Chromatin interaction
ENSG00000169612	Chromatin interaction
ENSG00000103723	Chromatin interaction
ENSG00000214575	Chromatin interaction
ENSG00000156232	Chromatin interaction
ENSG00000260351	Chromatin interaction
ENSG00000136404	Chromatin interaction
ENSG00000259767	Chromatin interaction
ENSG00000197381	Chromatin interaction
ENSG00000064726	Chromatin interaction
ENSG00000263643	Chromatin interaction

Extended variants
information (count: 130 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs1010820	0.88[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.84[EUR][1000 genomes]
rs10152762	1.00[ASN][1000 genomes]
rs1045742	0.94[CEU][hapmap];0.84[YRI][hapmap]
rs10520576	0.94[CEU][hapmap];0.96[TSI][hapmap];0.84[EUR][1000 genomes]
rs1075619	0.94[CEU][hapmap];0.83[GIH][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1112404	0.94[CEU][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs11259965	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs11259967	0.81[EUR][1000 genomes]
rs11259968	0.85[EUR][1000 genomes]
rs11259969	0.94[CEU][hapmap]
rs11259970	0.85[EUR][1000 genomes]
rs11852408	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs11852446	0.85[EUR][1000 genomes]
rs11852496	0.94[CEU][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs11853498	0.94[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11854888	0.84[EUR][1000 genomes]
rs11855639	0.84[EUR][1000 genomes]
rs11855722	1.00[ASN][1000 genomes]
rs11856164	0.94[CEU][hapmap];0.83[GIH][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11856299	0.83[TSI][hapmap]
rs11856806	0.85[EUR][1000 genomes]
rs11857428	0.86[EUR][1000 genomes]
rs11857641	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs11857990	0.89[GIH][hapmap]
rs11858162	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858377	0.94[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs11858468	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437558	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437858	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs12437901	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438398	0.84[EUR][1000 genomes]
rs12438575	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12439903	0.85[EUR][1000 genomes]
rs12440265	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12440386	0.84[CEU][hapmap];0.96[TSI][hapmap];0.86[EUR][1000 genomes]
rs12440562	0.94[CEU][hapmap];0.83[GIH][hapmap];0.80[MEX][hapmap];0.96[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441006	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441409	0.94[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441575	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441847	0.85[EUR][1000 genomes]
rs12441907	1.00[ASN][1000 genomes]
rs12442894	0.88[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs12443109	0.94[CEU][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs12443424	0.85[EUR][1000 genomes]
rs12591855	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs12593532	0.84[EUR][1000 genomes]
rs12593638	0.94[CEU][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs12595330	0.94[CEU][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs17359001	0.83[TSI][hapmap]
rs17359494	0.84[MEX][hapmap];0.83[TSI][hapmap]
rs17507693	0.85[EUR][1000 genomes]
rs17507763	0.85[EUR][1000 genomes]
rs17508610	0.94[CEU][hapmap];0.83[GIH][hapmap];0.80[MEX][hapmap];0.96[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17509233	0.94[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17567151	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs17567869	0.94[CEU][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs17568298	0.94[CEU][hapmap];0.83[GIH][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17568459	0.94[CEU][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs1901544	0.81[EUR][1000 genomes]
rs2034618	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs41326445	0.94[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap]
rs4300612	1.00[ASN][1000 genomes]
rs4408505	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4547301	1.00[ASN][1000 genomes]
rs4563011	0.94[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs4572349	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4779064	1.00[ASN][1000 genomes]
rs55683536	0.85[EUR][1000 genomes]
rs55691648	1.00[ASN][1000 genomes]
rs55933526	1.00[ASN][1000 genomes]
rs55934845	1.00[ASN][1000 genomes]
rs56045305	0.84[EUR][1000 genomes]
rs56052029	0.84[EUR][1000 genomes]
rs56352317	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57219675	0.85[EUR][1000 genomes]
rs57729044	0.85[EUR][1000 genomes]
rs58006707	0.85[EUR][1000 genomes]
rs58281154	0.85[EUR][1000 genomes]
rs58396076	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59896565	0.84[EUR][1000 genomes]
rs60344060	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60819629	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61267530	0.82[EUR][1000 genomes]
rs62010162	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010164	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010165	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010166	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010170	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010172	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010173	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010174	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010175	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010177	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010208	1.00[ASN][1000 genomes]
rs62010212	0.85[EUR][1000 genomes]
rs62010214	0.83[EUR][1000 genomes]
rs62010215	0.85[EUR][1000 genomes]
rs62010220	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010247	1.00[ASN][1000 genomes]
rs62010248	0.85[EUR][1000 genomes]
rs62010252	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010254	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010255	0.85[EUR][1000 genomes]
rs62010258	0.85[EUR][1000 genomes]
rs62011702	1.00[ASN][1000 genomes]
rs62011742	0.86[EUR][1000 genomes]
rs62011744	0.89[EUR][1000 genomes]
rs62011869	0.86[EUR][1000 genomes]
rs6603042	0.89[GIH][hapmap];1.00[ASN][1000 genomes]
rs66619192	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66757932	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67022650	0.87[EUR][1000 genomes]
rs7164083	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7165114	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs7165978	0.94[CEU][hapmap];0.96[TSI][hapmap];0.84[EUR][1000 genomes]
rs716886	0.85[GIH][hapmap]
rs7177462	0.85[GIH][hapmap]
rs72755992	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7495630	0.94[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7495911	0.94[CEU][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs8027577	0.94[CEU][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs8031723	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8035852	0.95[AFR][1000 genomes]
rs8038486	0.94[CEU][hapmap];0.96[TSI][hapmap];0.84[EUR][1000 genomes]
rs8043224	0.94[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs965263	0.94[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965264	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs9707895	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17361375	C15orf40	cis	parietal	SCAN
rs17361375	BTBD1	cis	parietal	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83679000-83680600	Active TSS	H1 Cell Line	embryonic stem cell
2	chr15:83679000-83680800	Active TSS	A549	lung
3	chr15:83679200-83680600	Active TSS	H9 Cell Line	embryonic stem cell
4	chr15:83679200-83680600	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr15:83679200-83680600	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr15:83679200-83681400	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr15:83679200-83681400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:83679400-83680400	Active TSS	Fetal Muscle Trunk	muscle
9	chr15:83679400-83680600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:83679400-83680600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:83679400-83680600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:83679400-83680600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:83679400-83680600	Active TSS	GM12878-XiMat	blood
14	chr15:83679400-83680600	Active TSS	HSMM	muscle
15	chr15:83679400-83680800	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr15:83679400-83680800	Active TSS	Aorta	Aorta
17	chr15:83679400-83680800	Active TSS	Right Ventricle	heart
18	chr15:83679400-83681000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:83679400-83681000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr15:83679400-83681000	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr15:83679400-83681200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr15:83679400-83681200	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr15:83679400-83681400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr15:83679600-83680400	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
25	chr15:83679600-83680600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr15:83679600-83680600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:83679600-83680600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:83679600-83680600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr15:83679600-83680600	Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr15:83679600-83680600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr15:83679600-83680600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr15:83679600-83680600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:83679600-83680600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:83679600-83680600	Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr15:83679600-83680600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr15:83679600-83680600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr15:83679600-83680600	Active TSS	Brain Hippocampus Middle	brain
38	chr15:83679600-83680600	Active TSS	Colon Smooth Muscle	Colon
39	chr15:83679600-83680600	Active TSS	Esophagus	oesophagus
40	chr15:83679600-83680600	Active TSS	Fetal Brain Female	brain
41	chr15:83679600-83680600	Active TSS	Fetal Heart	heart
42	chr15:83679600-83680600	Active TSS	Fetal Intestine Large	intestine
43	chr15:83679600-83680600	Active TSS	Lung	lung
44	chr15:83679600-83680600	Active TSS	Placenta Amnion	Placenta Amnion
45	chr15:83679600-83680600	Active TSS	Rectal Smooth Muscle	rectum
46	chr15:83679600-83680600	Active TSS	Sigmoid Colon	Sigmoid Colon
47	chr15:83679600-83680600	Active TSS	Dnd41	blood
48	chr15:83679600-83680600	Active TSS	HMEC	breast
49	chr15:83679600-83680600	Active TSS	HSMMtube	muscle
50	chr15:83679600-83680600	Active TSS	K562	blood

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