Variant report
| Variant | rs11855722 |
|---|---|
| Chromosome Location | chr15:83751420-83751421 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:83748502..83753073-chr15:83753716..83757836,7 | K562 | blood: | |
| 2 | chr15:83739861..83742001-chr15:83749630..83751735,2 | K562 | blood: | |
| 3 | chr15:83681680..83683853-chr15:83750233..83753153,2 | MCF-7 | breast: | |
| 4 | chr15:83748502..83751441-chr15:83755306..83758878,3 | K562 | blood: | |
| 5 | chr15:83734652..83738464-chr15:83750804..83754380,5 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000064726 | Chromatin interaction |
| ENSG00000263643 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:76)
| rs_ID | r2[population] |
|---|---|
| rs1075619 | 1.00[ASN][1000 genomes] |
| rs11853498 | 1.00[ASN][1000 genomes] |
| rs11856164 | 1.00[ASN][1000 genomes] |
| rs11858162 | 1.00[ASN][1000 genomes] |
| rs11858468 | 1.00[ASN][1000 genomes] |
| rs12437558 | 1.00[ASN][1000 genomes] |
| rs12437901 | 1.00[ASN][1000 genomes] |
| rs12438526 | 1.00[ASN][1000 genomes] |
| rs12438575 | 1.00[ASN][1000 genomes] |
| rs12438708 | 1.00[ASN][1000 genomes] |
| rs12439122 | 1.00[ASN][1000 genomes] |
| rs12440265 | 1.00[ASN][1000 genomes] |
| rs12440562 | 1.00[ASN][1000 genomes] |
| rs12441006 | 1.00[ASN][1000 genomes] |
| rs12441409 | 1.00[ASN][1000 genomes] |
| rs12441575 | 1.00[ASN][1000 genomes] |
| rs12441907 | 1.00[ASN][1000 genomes] |
| rs17361375 | 1.00[ASN][1000 genomes] |
| rs17508610 | 1.00[ASN][1000 genomes] |
| rs17509233 | 1.00[ASN][1000 genomes] |
| rs17568298 | 1.00[ASN][1000 genomes] |
| rs1877024 | 1.00[ASN][1000 genomes] |
| rs4300612 | 1.00[ASN][1000 genomes] |
| rs4408505 | 1.00[ASN][1000 genomes] |
| rs4423388 | 1.00[ASN][1000 genomes] |
| rs4480763 | 1.00[ASN][1000 genomes] |
| rs4547301 | 1.00[ASN][1000 genomes] |
| rs4572349 | 1.00[ASN][1000 genomes] |
| rs55691648 | 1.00[ASN][1000 genomes] |
| rs55756182 | 1.00[ASN][1000 genomes] |
| rs55878453 | 1.00[ASN][1000 genomes] |
| rs55893521 | 1.00[ASN][1000 genomes] |
| rs55905779 | 1.00[ASN][1000 genomes] |
| rs55932429 | 1.00[ASN][1000 genomes] |
| rs55933526 | 1.00[ASN][1000 genomes] |
| rs56352317 | 1.00[ASN][1000 genomes] |
| rs58396076 | 1.00[ASN][1000 genomes] |
| rs58847484 | 1.00[ASN][1000 genomes] |
| rs59828448 | 1.00[ASN][1000 genomes] |
| rs60344060 | 1.00[ASN][1000 genomes] |
| rs60819629 | 1.00[ASN][1000 genomes] |
| rs62010162 | 1.00[ASN][1000 genomes] |
| rs62010164 | 1.00[ASN][1000 genomes] |
| rs62010165 | 1.00[ASN][1000 genomes] |
| rs62010166 | 1.00[ASN][1000 genomes] |
| rs62010170 | 1.00[ASN][1000 genomes] |
| rs62010172 | 1.00[ASN][1000 genomes] |
| rs62010173 | 1.00[ASN][1000 genomes] |
| rs62010174 | 1.00[ASN][1000 genomes] |
| rs62010175 | 1.00[ASN][1000 genomes] |
| rs62010177 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62010208 | 1.00[ASN][1000 genomes] |
| rs62010220 | 1.00[ASN][1000 genomes] |
| rs62010247 | 1.00[ASN][1000 genomes] |
| rs62010252 | 1.00[ASN][1000 genomes] |
| rs62010254 | 1.00[ASN][1000 genomes] |
| rs62025914 | 1.00[ASN][1000 genomes] |
| rs62025915 | 1.00[ASN][1000 genomes] |
| rs62025919 | 1.00[ASN][1000 genomes] |
| rs62025921 | 1.00[ASN][1000 genomes] |
| rs62025923 | 1.00[ASN][1000 genomes] |
| rs6603042 | 1.00[ASN][1000 genomes] |
| rs66619192 | 1.00[ASN][1000 genomes] |
| rs66757932 | 1.00[ASN][1000 genomes] |
| rs67933024 | 1.00[ASN][1000 genomes] |
| rs7166078 | 1.00[ASN][1000 genomes] |
| rs7172590 | 1.00[ASN][1000 genomes] |
| rs7179675 | 1.00[ASN][1000 genomes] |
| rs7180692 | 1.00[ASN][1000 genomes] |
| rs7183171 | 1.00[ASN][1000 genomes] |
| rs72755992 | 1.00[ASN][1000 genomes] |
| rs7495630 | 1.00[ASN][1000 genomes] |
| rs8031723 | 1.00[ASN][1000 genomes] |
| rs8033380 | 1.00[ASN][1000 genomes] |
| rs965263 | 1.00[ASN][1000 genomes] |
| rs9707895 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1040336 | chr15:83578947-83768335 | Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:4)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs11855722 | TBL1X | trans | cerebellum | SCAN |
| rs11855722 | WHAMM | cis | parietal | SCAN |
| rs11855722 | ARNT2 | cis | cerebellum | SCAN |
| rs11855722 | BTBD1 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:83748800-83753800 | Weak transcription | Fetal Muscle Leg | muscle |
| 2 | chr15:83751400-83751600 | Flanking Active TSS | Skeletal Muscle Male | skeletal muscle |
| 3 | chr15:83751400-83751600 | Flanking Active TSS | Skeletal Muscle Female | skeletal muscle |
| 4 | chr15:83751400-83752000 | Enhancers | Psoas Muscle | Psoas |
| 5 | chr15:83751400-83752200 | Enhancers | K562 | blood |
