Variant report

Variant	rs62010175
Chromosome Location	chr15:83734393-83734394
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:83734129-83736621	Hela-S3	cervix:	n/a	n/a
2	MAZ	chr15:83734212-83736696	IMR90	lung:	n/a	chr15:83736450-83736459 chr15:83736451-83736458
3	MXI1	chr15:83733629-83734641	GM12878	blood:	n/a	n/a
4	WRNIP1	chr15:83734310-83734567	GM12878	blood:	n/a	n/a
5	CHD1	chr15:83734122-83734639	GM12878	blood:	n/a	n/a
6	MYC	chr15:83734223-83734625	MCF10A-Er-Src	breast:	n/a	n/a
7	MXI1	chr15:83733376-83736630	IMR90	lung:	n/a	n/a
8	MXI1	chr15:83733370-83736756	SK-N-SH	brain:	n/a	n/a
9	POLR2A	chr15:83733698-83734468	MCF10A-Er-Src	breast:	n/a	n/a
10	POLR2A	chr15:83733528-83734678	MCF10A-Er-Src	breast:	n/a	n/a
11	ELK1	chr15:83734365-83734518	GM12878	blood:	n/a	n/a

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:83731812..83734557-chr15:83779300..83781603,2	K562	blood:
2	chr15:83732514..83734789-chr15:83841378..83843328,2	MCF-7	breast:
3	chr15:83733297..83738085-chr15:83874642..83880991,12	MCF-7	breast:
4	chr15:83734393..83737227-chr15:83876568..83879136,2	K562	blood:
5	chr15:83734015..83735613-chr15:83737499..83739038,2	K562	blood:
6	chr15:83678946..83682301-chr15:83733959..83737732,7	K562	blood:
7	chr15:83679205..83686226-chr15:83733349..83739878,12	K562	blood:
8	chr15:83733314..83735882-chr15:83870661..83874279,4	K562	blood:
9	chr15:83734097..83737104-chr15:83774428..83777906,3	MCF-7	breast:
10	chr15:83716790..83719307-chr15:83732798..83735567,2	MCF-7	breast:
11	chr15:83678535..83684480-chr15:83731660..83738533,12	MCF-7	breast:
12	chr15:83349249..83350821-chr15:83733828..83735921,2	K562	blood:
13	chr15:83731075..83738271-chr15:83771545..83781798,12	K562	blood:
14	chr15:83723727..83726962-chr15:83733649..83736158,3	MCF-7	breast:
15	chr1:151963482..151966258-chr15:83734054..83736010,2	MCF-7	breast:
16	chr15:83734261..83736766-chr17:57914327..57917221,2	MCF-7	breast:
17	chr15:83679004..83681789-chr15:83733343..83738150,8	MCF-7	breast:
18	chr15:83733142..83737236-chr15:83872525..83879828,15	MCF-7	breast:
19	chr15:83734209..83736655-chr16:89627024..89629879,2	MCF-7	breast:

No data

Variant related genes	Relation type
MIR4515	TF binding region
ENSG00000167526	Chromatin interaction
ENSG00000249214	Chromatin interaction
ENSG00000062716	Chromatin interaction
ENSG00000260608	Chromatin interaction
ENSG00000103723	Chromatin interaction
ENSG00000166503	Chromatin interaction
ENSG00000136404	Chromatin interaction
ENSG00000169609	Chromatin interaction
ENSG00000064726	Chromatin interaction
ENSG00000200084	Chromatin interaction
ENSG00000197747	Chromatin interaction

Extended variants
information (count: 143 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:141)

rs_ID	r²[population]
rs1010820	0.84[EUR][1000 genomes]
rs10520576	0.84[EUR][1000 genomes]
rs1075619	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1112404	0.85[EUR][1000 genomes]
rs11259965	0.84[EUR][1000 genomes]
rs11259967	0.81[EUR][1000 genomes]
rs11259968	0.85[EUR][1000 genomes]
rs11259970	0.85[EUR][1000 genomes]
rs11852287	0.81[EUR][1000 genomes]
rs11852408	0.85[EUR][1000 genomes]
rs11852446	0.85[EUR][1000 genomes]
rs11852496	0.82[EUR][1000 genomes]
rs11853498	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11854888	0.84[EUR][1000 genomes]
rs11855639	0.84[EUR][1000 genomes]
rs11855722	1.00[ASN][1000 genomes]
rs11856164	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11856806	0.85[EUR][1000 genomes]
rs11857428	0.86[EUR][1000 genomes]
rs11857641	0.83[EUR][1000 genomes]
rs11858162	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858377	0.86[EUR][1000 genomes]
rs11858468	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437558	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437858	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12437901	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438398	0.84[EUR][1000 genomes]
rs12438526	1.00[ASN][1000 genomes]
rs12438575	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438708	1.00[ASN][1000 genomes]
rs12439122	1.00[ASN][1000 genomes]
rs12439903	0.85[EUR][1000 genomes]
rs12440265	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12440386	0.86[EUR][1000 genomes]
rs12440562	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441006	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441409	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441575	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441847	0.85[EUR][1000 genomes]
rs12441907	1.00[ASN][1000 genomes]
rs12442894	0.82[EUR][1000 genomes]
rs12443109	0.85[EUR][1000 genomes]
rs12443424	0.85[EUR][1000 genomes]
rs12591855	0.85[EUR][1000 genomes]
rs12593532	0.84[EUR][1000 genomes]
rs12593638	0.82[EUR][1000 genomes]
rs12595330	0.85[EUR][1000 genomes]
rs17361375	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17507693	0.85[EUR][1000 genomes]
rs17507763	0.85[EUR][1000 genomes]
rs17508610	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17509233	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17567151	0.84[EUR][1000 genomes]
rs17567869	0.82[EUR][1000 genomes]
rs17568298	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17568459	0.85[EUR][1000 genomes]
rs1877024	1.00[ASN][1000 genomes]
rs1901544	0.81[EUR][1000 genomes]
rs2034618	0.85[EUR][1000 genomes]
rs4300612	1.00[ASN][1000 genomes]
rs4408505	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4423388	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4480763	1.00[ASN][1000 genomes]
rs4547301	1.00[ASN][1000 genomes]
rs4563011	0.83[EUR][1000 genomes]
rs4572349	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55683536	0.85[EUR][1000 genomes]
rs55691648	1.00[ASN][1000 genomes]
rs55756182	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55878453	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55893521	1.00[ASN][1000 genomes]
rs55905779	1.00[ASN][1000 genomes]
rs55932429	1.00[ASN][1000 genomes]
rs55933526	1.00[ASN][1000 genomes]
rs56045305	0.84[EUR][1000 genomes]
rs56052029	0.84[EUR][1000 genomes]
rs56352317	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57219675	0.85[EUR][1000 genomes]
rs57729044	0.85[EUR][1000 genomes]
rs58006707	0.85[EUR][1000 genomes]
rs58281154	0.85[EUR][1000 genomes]
rs58396076	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58847484	1.00[ASN][1000 genomes]
rs59828448	1.00[ASN][1000 genomes]
rs59896565	0.84[EUR][1000 genomes]
rs60344060	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60819629	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61267530	0.82[EUR][1000 genomes]
rs62010162	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010164	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010165	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010166	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010170	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010172	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010173	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010174	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010177	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010208	1.00[ASN][1000 genomes]
rs62010212	0.85[EUR][1000 genomes]
rs62010214	0.83[EUR][1000 genomes]
rs62010215	0.85[EUR][1000 genomes]
rs62010220	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010247	1.00[ASN][1000 genomes]
rs62010248	0.85[EUR][1000 genomes]
rs62010252	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010254	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010255	0.85[EUR][1000 genomes]
rs62010258	0.85[EUR][1000 genomes]
rs62011742	0.86[EUR][1000 genomes]
rs62011744	0.89[EUR][1000 genomes]
rs62011869	0.86[EUR][1000 genomes]
rs62025914	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62025915	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62025919	1.00[ASN][1000 genomes]
rs62025921	1.00[ASN][1000 genomes]
rs62025923	1.00[ASN][1000 genomes]
rs6603042	1.00[ASN][1000 genomes]
rs66619192	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66757932	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67022650	0.87[EUR][1000 genomes]
rs67933024	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7164083	0.84[EUR][1000 genomes]
rs7165114	0.85[EUR][1000 genomes]
rs7165978	0.84[EUR][1000 genomes]
rs7166078	1.00[ASN][1000 genomes]
rs7172590	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7179675	1.00[ASN][1000 genomes]
rs7180692	1.00[ASN][1000 genomes]
rs7183171	1.00[ASN][1000 genomes]
rs72755992	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7495630	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7495911	0.85[EUR][1000 genomes]
rs8027577	0.85[EUR][1000 genomes]
rs8031723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8033380	1.00[ASN][1000 genomes]
rs8035852	0.90[AFR][1000 genomes]
rs8038486	0.84[EUR][1000 genomes]
rs8043224	0.86[EUR][1000 genomes]
rs965263	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965264	0.84[EUR][1000 genomes]
rs9707895	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83700400-83734400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:83725400-83734600	Weak transcription	Placenta	Placenta
3	chr15:83725600-83734400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:83729800-83734400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr15:83730200-83734600	Enhancers	Small Intestine	intestine
6	chr15:83730400-83734400	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr15:83730400-83734600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:83730600-83734400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:83730600-83734400	Weak transcription	Esophagus	oesophagus
10	chr15:83730600-83734400	Weak transcription	Lung	lung
11	chr15:83731200-83734400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr15:83731400-83734400	Enhancers	Primary B cells from peripheral blood	blood
13	chr15:83731400-83736800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr15:83731600-83734600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr15:83732200-83734600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr15:83732400-83734400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:83732400-83734600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
18	chr15:83732600-83734400	Weak transcription	Gastric	stomach
19	chr15:83732600-83734600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:83732600-83734600	Transcr. at gene 5' and 3'	A549	lung
21	chr15:83732600-83734800	Weak transcription	Pancreas	Pancrea
22	chr15:83732600-83734800	Flanking Active TSS	HUVEC	blood vessel
23	chr15:83732800-83734400	Weak transcription	Fetal Thymus	thymus
24	chr15:83732800-83735000	Weak transcription	Spleen	Spleen
25	chr15:83732800-83735600	Active TSS	Right Atrium	heart
26	chr15:83732800-83736200	Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr15:83732800-83736400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr15:83732800-83736600	Active TSS	Right Ventricle	heart
29	chr15:83733000-83734800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr15:83733000-83734800	Flanking Active TSS	Dnd41	blood
31	chr15:83733000-83734800	Flanking Active TSS	NHEK	skin
32	chr15:83733000-83736000	Active TSS	HMEC	breast
33	chr15:83733000-83736200	Active TSS	GM12878-XiMat	blood
34	chr15:83733000-83736600	Active TSS	Pancreatic Islets	Pancreatic Islet
35	chr15:83733000-83736600	Active TSS	Psoas Muscle	Psoas
36	chr15:83733000-83736800	Active TSS	Rectal Mucosa Donor 29	rectum
37	chr15:83733200-83735200	Flanking Active TSS	Primary T cells from cord blood	blood
38	chr15:83733200-83735200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr15:83733200-83735400	Flanking Active TSS	Primary B cells from cord blood	blood
40	chr15:83733200-83736200	Active TSS	K562	blood
41	chr15:83733400-83734600	Active TSS	Primary T cells fromperipheralblood	blood
42	chr15:83733400-83734800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
43	chr15:83733400-83734800	Flanking Active TSS	Brain Germinal Matrix	brain
44	chr15:83733400-83734800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
45	chr15:83733400-83735000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
46	chr15:83733400-83735200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
47	chr15:83733400-83735400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr15:83733400-83735400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr15:83733400-83735400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
50	chr15:83733400-83735600	Flanking Active TSS	Primary hematopoietic stem cells	blood

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