Variant report

Variant	rs62011744
Chromosome Location	chr15:83650753-83650754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr15:83650573-83650788	HepG2	liver:	n/a	chr15:83650682-83650693

No.	Distal block	Cell Line	Cell type
1	chr15:83648429..83650845-chr15:83651784..83654033,2	K562	blood:
2	chr15:83648429..83650791-chr15:83651784..83654037,2	K562	blood:
3	chr15:83623182..83625191-chr15:83650294..83653227,2	K562	blood:
4	chr15:83648407..83651273-chr15:83654725..83656444,2	K562	blood:

Variant related genes	Relation type
FAM103A1	TF binding region
ENSG00000169612	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1010820	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1105714	1.00[ASN][1000 genomes]
rs11259957	1.00[ASN][1000 genomes]
rs11856299	1.00[ASN][1000 genomes]
rs11858162	0.89[EUR][1000 genomes]
rs11858468	0.88[EUR][1000 genomes]
rs12437558	0.89[EUR][1000 genomes]
rs12437858	0.88[EUR][1000 genomes]
rs12437901	0.89[EUR][1000 genomes]
rs12438575	0.89[EUR][1000 genomes]
rs12440265	0.89[EUR][1000 genomes]
rs12441006	0.89[EUR][1000 genomes]
rs12441575	0.89[EUR][1000 genomes]
rs12442894	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17358518	1.00[ASN][1000 genomes]
rs17359001	1.00[ASN][1000 genomes]
rs17361375	0.89[EUR][1000 genomes]
rs2019208	1.00[ASN][1000 genomes]
rs2055891	1.00[ASN][1000 genomes]
rs55800901	1.00[ASN][1000 genomes]
rs58396076	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60819629	0.89[EUR][1000 genomes]
rs62010162	0.91[EUR][1000 genomes]
rs62010164	0.89[EUR][1000 genomes]
rs62010165	0.89[EUR][1000 genomes]
rs62010166	0.89[EUR][1000 genomes]
rs62010170	0.87[EUR][1000 genomes]
rs62010172	0.85[EUR][1000 genomes]
rs62010173	0.89[EUR][1000 genomes]
rs62010174	0.88[EUR][1000 genomes]
rs62010175	0.89[EUR][1000 genomes]
rs62010177	0.88[EUR][1000 genomes]
rs62011706	1.00[ASN][1000 genomes]
rs62011709	1.00[ASN][1000 genomes]
rs62011712	1.00[ASN][1000 genomes]
rs62011735	1.00[ASN][1000 genomes]
rs62011742	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66619192	0.89[EUR][1000 genomes]
rs66757932	0.88[EUR][1000 genomes]
rs67022650	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7179000	1.00[ASN][1000 genomes]
rs72753993	1.00[ASN][1000 genomes]
rs8031723	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83635600-83653800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:83635800-83654000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr15:83640200-83654000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:83640600-83654000	Weak transcription	HSMMtube	muscle
5	chr15:83640800-83654000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr15:83641200-83653800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr15:83641200-83654200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr15:83642000-83653800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr15:83642200-83653800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:83642200-83653800	Weak transcription	HSMM	muscle
11	chr15:83642200-83654000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr15:83642400-83653800	Weak transcription	Liver	Liver
13	chr15:83644400-83654000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr15:83644600-83654000	Weak transcription	Primary B cells from cord blood	blood
15	chr15:83644800-83653800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr15:83644800-83654000	Weak transcription	A549	lung
17	chr15:83645400-83654000	Weak transcription	Brain Anterior Caudate	brain
18	chr15:83645800-83654200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr15:83646400-83654000	Weak transcription	K562	blood
20	chr15:83647000-83653800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr15:83647400-83653800	Weak transcription	Primary T cells from cord blood	blood
22	chr15:83647600-83654000	Weak transcription	Lung	lung
23	chr15:83647800-83654000	Weak transcription	Thymus	Thymus
24	chr15:83648200-83654000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr15:83649200-83653800	Weak transcription	Brain Substantia Nigra	brain
26	chr15:83649200-83654200	Weak transcription	Placenta	Placenta
27	chr15:83649400-83654000	Weak transcription	HMEC	breast
28	chr15:83649800-83654000	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr15:83650000-83653400	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr15:83650000-83654200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr15:83650600-83653800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr15:83650600-83654000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:83650600-83654000	Weak transcription	Fetal Thymus	thymus

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