Variant report

Variant	rs62010165
Chromosome Location	chr15:83689914-83689915
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CUX1	chr15:83689754-83690070	GM12878	blood:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:83688240..83691161-chr15:83697132..83700281,3	K562	blood:
2	chr15:83685645..83690096-chr15:83691641..83694486,5	MCF-7	breast:
3	chr15:83679349..83680973-chr15:83688318..83689991,2	MCF-7	breast:
4	chr15:83683950..83686257-chr15:83688068..83690972,3	MCF-7	breast:
5	chr15:83679667..83682766-chr15:83686991..83690446,4	MCF-7	breast:
6	chr15:83680931..83684060-chr15:83687587..83694949,8	K562	blood:
7	chr15:83679499..83683217-chr15:83687466..83692124,6	K562	blood:
8	chr15:83687509..83691091-chr15:83696720..83699538,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000260351	TF binding region
ENSG00000260608	Chromatin interaction
ENSG00000169609	Chromatin interaction
ENSG00000249214	Chromatin interaction
ENSG00000064726	Chromatin interaction
ENSG00000259767	Chromatin interaction

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs1010820	0.84[EUR][1000 genomes]
rs10152762	1.00[ASN][1000 genomes]
rs10520576	0.84[EUR][1000 genomes]
rs1075619	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1112404	0.85[EUR][1000 genomes]
rs11259965	0.84[EUR][1000 genomes]
rs11259967	0.81[EUR][1000 genomes]
rs11259968	0.85[EUR][1000 genomes]
rs11259970	0.85[EUR][1000 genomes]
rs11852408	0.85[EUR][1000 genomes]
rs11852446	0.85[EUR][1000 genomes]
rs11852496	0.82[EUR][1000 genomes]
rs11853498	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11854888	0.84[EUR][1000 genomes]
rs11855639	0.84[EUR][1000 genomes]
rs11855722	1.00[ASN][1000 genomes]
rs11856164	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11856806	0.85[EUR][1000 genomes]
rs11857428	0.86[EUR][1000 genomes]
rs11857641	0.83[EUR][1000 genomes]
rs11858162	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858377	0.86[EUR][1000 genomes]
rs11858468	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437558	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437858	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12437901	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438398	0.84[EUR][1000 genomes]
rs12438575	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12439903	0.85[EUR][1000 genomes]
rs12440265	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12440386	0.86[EUR][1000 genomes]
rs12440562	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441006	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441409	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441575	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441847	0.85[EUR][1000 genomes]
rs12441907	1.00[ASN][1000 genomes]
rs12442894	0.82[EUR][1000 genomes]
rs12443109	0.85[EUR][1000 genomes]
rs12443424	0.85[EUR][1000 genomes]
rs12591855	0.85[EUR][1000 genomes]
rs12593532	0.84[EUR][1000 genomes]
rs12593638	0.82[EUR][1000 genomes]
rs12595330	0.85[EUR][1000 genomes]
rs17361375	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17507693	0.85[EUR][1000 genomes]
rs17507763	0.85[EUR][1000 genomes]
rs17508610	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17509233	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17567151	0.84[EUR][1000 genomes]
rs17567869	0.82[EUR][1000 genomes]
rs17568298	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17568459	0.85[EUR][1000 genomes]
rs1901544	0.81[EUR][1000 genomes]
rs2034618	0.85[EUR][1000 genomes]
rs4300612	1.00[ASN][1000 genomes]
rs4408505	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4423388	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4547301	1.00[ASN][1000 genomes]
rs4563011	0.83[EUR][1000 genomes]
rs4572349	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4779064	1.00[ASN][1000 genomes]
rs55683536	0.85[EUR][1000 genomes]
rs55691648	1.00[ASN][1000 genomes]
rs55933526	1.00[ASN][1000 genomes]
rs55934845	1.00[ASN][1000 genomes]
rs56045305	0.84[EUR][1000 genomes]
rs56052029	0.84[EUR][1000 genomes]
rs56352317	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57219675	0.85[EUR][1000 genomes]
rs57729044	0.85[EUR][1000 genomes]
rs58006707	0.85[EUR][1000 genomes]
rs58281154	0.85[EUR][1000 genomes]
rs58396076	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59896565	0.84[EUR][1000 genomes]
rs60344060	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60819629	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61267530	0.82[EUR][1000 genomes]
rs62010162	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010164	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010170	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010172	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010173	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010174	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010175	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010177	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010208	1.00[ASN][1000 genomes]
rs62010212	0.85[EUR][1000 genomes]
rs62010214	0.83[EUR][1000 genomes]
rs62010215	0.85[EUR][1000 genomes]
rs62010220	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010247	1.00[ASN][1000 genomes]
rs62010248	0.85[EUR][1000 genomes]
rs62010252	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010254	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010255	0.85[EUR][1000 genomes]
rs62010258	0.85[EUR][1000 genomes]
rs62011702	1.00[ASN][1000 genomes]
rs62011742	0.86[EUR][1000 genomes]
rs62011744	0.89[EUR][1000 genomes]
rs62011869	0.86[EUR][1000 genomes]
rs6603042	1.00[ASN][1000 genomes]
rs66619192	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66757932	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67022650	0.87[EUR][1000 genomes]
rs7164083	0.84[EUR][1000 genomes]
rs7165114	0.85[EUR][1000 genomes]
rs7165978	0.84[EUR][1000 genomes]
rs72755992	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7495630	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7495911	0.85[EUR][1000 genomes]
rs8027577	0.85[EUR][1000 genomes]
rs8031723	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8035852	0.97[AFR][1000 genomes]
rs8038486	0.84[EUR][1000 genomes]
rs8043224	0.86[EUR][1000 genomes]
rs965263	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965264	0.84[EUR][1000 genomes]
rs9707895	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83681000-83700200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:83681000-83705000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:83681200-83693400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr15:83681200-83698200	Weak transcription	NHLF	lung
5	chr15:83681200-83710200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:83681400-83698000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:83681400-83698400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:83681600-83698200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr15:83681600-83698200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:83681600-83732000	Weak transcription	Stomach Mucosa	stomach
11	chr15:83682000-83708400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:83682200-83708600	Weak transcription	Fetal Heart	heart
13	chr15:83683000-83691000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:83683000-83723000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr15:83683400-83726600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:83683600-83690200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr15:83684000-83691000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:83684200-83690400	Strong transcription	Left Ventricle	heart
19	chr15:83684200-83690400	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr15:83684200-83690800	Strong transcription	GM12878-XiMat	blood
21	chr15:83684200-83691200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:83684200-83691200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:83684200-83691400	Strong transcription	Fetal Muscle Trunk	muscle
24	chr15:83684400-83690200	Strong transcription	HSMM	muscle
25	chr15:83684400-83690400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr15:83684400-83690400	Strong transcription	Stomach Smooth Muscle	stomach
27	chr15:83684400-83690800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr15:83684400-83691000	Strong transcription	Primary B cells from peripheral blood	blood
29	chr15:83684400-83691000	Strong transcription	Hela-S3	cervix
30	chr15:83684600-83690000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr15:83684600-83690200	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr15:83684600-83691000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr15:83684600-83691000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr15:83684600-83691200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr15:83684600-83691200	Strong transcription	Fetal Thymus	thymus
36	chr15:83684600-83693000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr15:83684600-83695200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr15:83684800-83690400	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr15:83685200-83690400	Strong transcription	Duodenum Mucosa	Duodenum
40	chr15:83685200-83691000	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr15:83685400-83690000	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr15:83685400-83690200	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr15:83685400-83690800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr15:83685400-83690800	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr15:83685600-83690000	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr15:83685600-83690000	Strong transcription	NHDF-Ad	bronchial
47	chr15:83685600-83690200	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr15:83685600-83691000	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr15:83685600-83693800	Strong transcription	Fetal Muscle Leg	muscle
50	chr15:83685800-83690000	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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