Variant report

Variant	rs55934845
Chromosome Location	chr15:83470119-83470120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83417408..83420922-chr15:83469506..83474317,6	K562	blood:
2	chr15:83418433..83420351-chr15:83468223..83470986,2	MCF-7	breast:
3	chr15:83419016..83420717-chr15:83469585..83471203,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250988	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10152762	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1105714	0.88[EUR][1000 genomes]
rs1108134	0.83[EUR][1000 genomes]
rs11858162	1.00[ASN][1000 genomes]
rs11858468	1.00[ASN][1000 genomes]
rs12437901	1.00[ASN][1000 genomes]
rs12441575	1.00[ASN][1000 genomes]
rs17361375	1.00[ASN][1000 genomes]
rs4779064	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55800901	0.86[EUR][1000 genomes]
rs55933526	1.00[ASN][1000 genomes]
rs58396076	1.00[ASN][1000 genomes]
rs60819629	1.00[ASN][1000 genomes]
rs62010162	1.00[ASN][1000 genomes]
rs62010164	1.00[ASN][1000 genomes]
rs62010165	1.00[ASN][1000 genomes]
rs62010166	1.00[ASN][1000 genomes]
rs62011682	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011683	1.00[ASN][1000 genomes]
rs62011684	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011702	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011706	0.88[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs6603042	1.00[ASN][1000 genomes]
rs66619192	1.00[ASN][1000 genomes]
rs7179000	0.81[EUR][1000 genomes]
rs7179851	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036462	chr15:83245326-83472507	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv469557	chr15:83417763-83560629	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv482340	chr15:83417763-83560629	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
4	nsv471687	chr15:83417764-83560629	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv977072	chr15:83467994-83473044	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83450400-83477600	Weak transcription	Brain Hippocampus Middle	brain
2	chr15:83467400-83470400	Enhancers	Fetal Heart	heart
3	chr15:83468800-83470200	Weak transcription	Right Ventricle	heart
4	chr15:83469000-83470600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr15:83469200-83471000	Weak transcription	Fetal Muscle Leg	muscle
6	chr15:83469200-83471000	Weak transcription	Right Atrium	heart
7	chr15:83469200-83477600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr15:83469400-83477600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:83469800-83471400	Enhancers	K562	blood
10	chr15:83469800-83471800	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
11	chr15:83469800-83477400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr15:83470000-83470400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr15:83470000-83471600	Enhancers	Left Ventricle	heart
14	chr15:83470000-83472600	Enhancers	Psoas Muscle	Psoas

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