Variant report

Variant	rs1105714
Chromosome Location	chr15:83516968-83516969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83514448..83517408-chr15:83618486..83620458,2	MCF-7	breast:
2	chr15:83508986..83511908-chr15:83514316..83517080,4	K562	blood:
3	chr15:83503590..83506194-chr15:83514580..83518398,3	K562	blood:
4	chr15:83516928..83520058-chr15:83678480..83682741,4	K562	blood:
5	chr15:83514647..83517195-chr15:83671191..83673350,2	K562	blood:
6	chr15:83516468..83518353-chr15:83646598..83648267,2	MCF-7	breast:
7	chr15:83417131..83419206-chr15:83515270..83517516,2	K562	blood:

Variant related genes	Relation type
ENSG00000260608	Chromatin interaction
ENSG00000169609	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1010820	1.00[ASN][1000 genomes]
rs10152762	0.84[EUR][1000 genomes]
rs1108134	0.80[CEU][hapmap];0.89[YRI][hapmap]
rs11259957	1.00[ASN][1000 genomes]
rs11856299	1.00[ASN][1000 genomes]
rs12442894	1.00[ASN][1000 genomes]
rs17358518	1.00[ASN][1000 genomes]
rs17359001	1.00[ASN][1000 genomes]
rs17359494	1.00[YRI][hapmap]
rs2019208	1.00[ASN][1000 genomes]
rs2055891	1.00[ASN][1000 genomes]
rs4779064	0.86[CEU][hapmap]
rs55800901	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55934845	0.88[EUR][1000 genomes]
rs62011682	0.82[EUR][1000 genomes]
rs62011684	0.83[EUR][1000 genomes]
rs62011702	0.86[EUR][1000 genomes]
rs62011706	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011709	1.00[ASN][1000 genomes]
rs62011712	1.00[ASN][1000 genomes]
rs62011735	1.00[ASN][1000 genomes]
rs62011742	1.00[ASN][1000 genomes]
rs62011744	1.00[ASN][1000 genomes]
rs67022650	1.00[ASN][1000 genomes]
rs7179000	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7179851	0.86[CEU][hapmap];0.89[YRI][hapmap];0.83[EUR][1000 genomes]
rs72753993	1.00[ASN][1000 genomes]
rs9806642	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469557	chr15:83417763-83560629	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv482340	chr15:83417763-83560629	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv471687	chr15:83417764-83560629	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83500400-83517600	Weak transcription	Fetal Heart	heart
2	chr15:83503600-83518200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:83503600-83518600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr15:83503600-83518600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:83504600-83549400	Weak transcription	Psoas Muscle	Psoas
6	chr15:83505000-83518200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr15:83505800-83520800	Weak transcription	Dnd41	blood
8	chr15:83505800-83522400	Weak transcription	Fetal Kidney	kidney
9	chr15:83506000-83518400	Weak transcription	NH-A	brain
10	chr15:83506000-83524200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:83506200-83518400	Weak transcription	NHDF-Ad	bronchial
12	chr15:83506200-83518800	Weak transcription	Brain Angular Gyrus	brain
13	chr15:83506200-83527400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:83506200-83543800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr15:83506400-83518200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr15:83506400-83518600	Weak transcription	Ovary	ovary
17	chr15:83506400-83518800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:83506600-83518200	Weak transcription	Right Ventricle	heart
19	chr15:83506800-83518200	Weak transcription	A549	lung
20	chr15:83507000-83517000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:83507000-83518000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr15:83507000-83518200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:83507000-83518200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr15:83507000-83518600	Weak transcription	Spleen	Spleen
25	chr15:83507200-83518000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr15:83507200-83518200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:83507200-83518200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:83507200-83518200	Weak transcription	Colon Smooth Muscle	Colon
29	chr15:83507200-83518200	Weak transcription	Esophagus	oesophagus
30	chr15:83507200-83518600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr15:83507200-83539400	Weak transcription	Fetal Intestine Small	intestine
32	chr15:83507400-83517200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr15:83507400-83518000	Weak transcription	NHLF	lung
34	chr15:83507400-83518200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr15:83507400-83518800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr15:83507600-83517200	Weak transcription	Adipose Nuclei	Adipose
37	chr15:83507600-83518000	Weak transcription	Fetal Lung	lung
38	chr15:83507600-83518000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr15:83507600-83518200	Weak transcription	Fetal Brain Female	brain
40	chr15:83507600-83518400	Weak transcription	Osteobl	bone
41	chr15:83507800-83519200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr15:83507800-83521800	Weak transcription	Brain Germinal Matrix	brain
43	chr15:83508000-83518600	Weak transcription	Brain Hippocampus Middle	brain
44	chr15:83508200-83517000	Weak transcription	Fetal Muscle Leg	muscle
45	chr15:83508200-83518200	Weak transcription	Left Ventricle	heart
46	chr15:83508600-83518200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr15:83510400-83517000	Strong transcription	Liver	Liver
48	chr15:83511400-83517400	Strong transcription	Pancreas	Pancrea
49	chr15:83513000-83517000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr15:83513000-83517000	Weak transcription	Fetal Stomach	stomach

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