Variant report

Variant	rs62011742
Chromosome Location	chr15:83623066-83623067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:83620495..83623262-chr15:83678706..83680302,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169609	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1010820	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1105714	1.00[ASN][1000 genomes]
rs11259957	1.00[ASN][1000 genomes]
rs11856299	1.00[ASN][1000 genomes]
rs11858162	0.86[EUR][1000 genomes]
rs11858468	0.85[EUR][1000 genomes]
rs12437558	0.86[EUR][1000 genomes]
rs12437858	0.84[EUR][1000 genomes]
rs12437901	0.86[EUR][1000 genomes]
rs12438575	0.86[EUR][1000 genomes]
rs12440265	0.86[EUR][1000 genomes]
rs12441006	0.86[EUR][1000 genomes]
rs12441575	0.86[EUR][1000 genomes]
rs12442894	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17358518	1.00[ASN][1000 genomes]
rs17359001	1.00[ASN][1000 genomes]
rs17361375	0.86[EUR][1000 genomes]
rs2019208	1.00[ASN][1000 genomes]
rs2055891	1.00[ASN][1000 genomes]
rs55800901	1.00[ASN][1000 genomes]
rs58396076	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60819629	0.86[EUR][1000 genomes]
rs62010162	0.86[EUR][1000 genomes]
rs62010164	0.86[EUR][1000 genomes]
rs62010165	0.86[EUR][1000 genomes]
rs62010166	0.86[EUR][1000 genomes]
rs62010170	0.84[EUR][1000 genomes]
rs62010172	0.82[EUR][1000 genomes]
rs62010173	0.86[EUR][1000 genomes]
rs62010174	0.84[EUR][1000 genomes]
rs62010175	0.86[EUR][1000 genomes]
rs62010177	0.84[EUR][1000 genomes]
rs62011706	1.00[ASN][1000 genomes]
rs62011709	1.00[ASN][1000 genomes]
rs62011712	1.00[ASN][1000 genomes]
rs62011735	1.00[ASN][1000 genomes]
rs62011744	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66619192	0.86[EUR][1000 genomes]
rs66757932	0.84[EUR][1000 genomes]
rs67022650	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7179000	1.00[ASN][1000 genomes]
rs72753993	1.00[ASN][1000 genomes]
rs8031723	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83622000-83627000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:83622000-83627000	Weak transcription	Liver	Liver
3	chr15:83622000-83627000	Weak transcription	Gastric	stomach
4	chr15:83622000-83627000	Weak transcription	HMEC	breast
5	chr15:83622000-83629600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:83622000-83631200	Weak transcription	Spleen	Spleen
7	chr15:83622000-83635200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:83622200-83623400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr15:83622200-83627000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:83622200-83627000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr15:83622200-83630200	Weak transcription	Primary T cells from cord blood	blood
12	chr15:83622200-83649400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:83622400-83625000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:83622400-83625600	Weak transcription	Pancreas	Pancrea
15	chr15:83622400-83627000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr15:83622800-83632000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:83623000-83632000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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