Variant report

Variant	rs17358518
Chromosome Location	chr15:83507377-83507378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83476532..83478667-chr15:83507129..83509153,3	K562	blood:
2	chr15:83477415..83480373-chr15:83506033..83507641,2	MCF-7	breast:
3	chr15:83477910..83479814-chr15:83506678..83508717,2	MCF-7	breast:
4	chr15:83417933..83421305-chr15:83506438..83509474,3	MCF-7	breast:
5	chr15:83501706..83503729-chr15:83505602..83507499,2	MCF-7	breast:
6	chr15:83502060..83506247-chr15:83506644..83510779,4	K562	blood:
7	chr15:83502060..83506130-chr15:83507202..83510779,6	K562	blood:

Variant related genes	Relation type
ENSG00000250988	Chromatin interaction
ENSG00000156232	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1010820	1.00[ASN][1000 genomes]
rs1105714	1.00[ASN][1000 genomes]
rs1108134	0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs11259957	1.00[ASN][1000 genomes]
rs11633991	1.00[LWK][hapmap]
rs11856299	1.00[ASN][1000 genomes]
rs12442894	1.00[ASN][1000 genomes]
rs1431717	1.00[LWK][hapmap]
rs17359001	1.00[ASN][1000 genomes]
rs2019208	1.00[ASN][1000 genomes]
rs2055891	1.00[ASN][1000 genomes]
rs4779064	0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs55800901	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011706	1.00[ASN][1000 genomes]
rs62011709	1.00[ASN][1000 genomes]
rs62011712	1.00[ASN][1000 genomes]
rs62011735	1.00[ASN][1000 genomes]
rs62011742	1.00[ASN][1000 genomes]
rs62011744	1.00[ASN][1000 genomes]
rs67022650	1.00[ASN][1000 genomes]
rs7179000	0.85[CEU][hapmap];0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753993	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469557	chr15:83417763-83560629	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv482340	chr15:83417763-83560629	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv471687	chr15:83417764-83560629	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83481800-83507600	Strong transcription	Adipose Nuclei	Adipose
2	chr15:83483200-83507400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr15:83491000-83508000	Strong transcription	Thymus	Thymus
4	chr15:83491200-83507400	Strong transcription	Skeletal Muscle Female	skeletal muscle
5	chr15:83491400-83507400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:83491400-83507400	Strong transcription	Fetal Muscle Leg	muscle
7	chr15:83491400-83508200	Strong transcription	Left Ventricle	heart
8	chr15:83491800-83507600	Strong transcription	Skeletal Muscle Male	skeletal muscle
9	chr15:83492000-83507400	Strong transcription	Duodenum Smooth Muscle	Duodenum
10	chr15:83492200-83507400	Strong transcription	Fetal Muscle Trunk	muscle
11	chr15:83493000-83507600	Strong transcription	Fetal Brain Female	brain
12	chr15:83493600-83507400	Strong transcription	Primary T cells from cord blood	blood
13	chr15:83493600-83507800	Strong transcription	Brain Germinal Matrix	brain
14	chr15:83493600-83508000	Strong transcription	Primary B cells from cord blood	blood
15	chr15:83494800-83507400	Strong transcription	Brain Substantia Nigra	brain
16	chr15:83496600-83507800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr15:83500400-83517600	Weak transcription	Fetal Heart	heart
18	chr15:83501200-83508000	Strong transcription	Brain Hippocampus Middle	brain
19	chr15:83501800-83507400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr15:83502000-83507400	Strong transcription	Brain Anterior Caudate	brain
21	chr15:83502200-83507400	Strong transcription	Primary hematopoietic stem cells	blood
22	chr15:83502200-83507400	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr15:83502400-83507400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:83502400-83507400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:83502400-83507400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr15:83502400-83507400	Strong transcription	Gastric	stomach
27	chr15:83502400-83507400	Strong transcription	Pancreas	Pancrea
28	chr15:83502400-83507400	Strong transcription	NHLF	lung
29	chr15:83502400-83507600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr15:83502400-83507600	Strong transcription	Liver	Liver
31	chr15:83502400-83507600	Strong transcription	Fetal Lung	lung
32	chr15:83502400-83507600	Strong transcription	Osteobl	bone
33	chr15:83502400-83507800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:83502400-83507800	Strong transcription	HSMM	muscle
35	chr15:83502400-83508000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:83502400-83508200	Strong transcription	HSMMtube	muscle
37	chr15:83502400-83508200	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr15:83502400-83508600	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr15:83502600-83507600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr15:83502600-83507600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr15:83502600-83508000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr15:83502600-83508200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr15:83502600-83509200	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr15:83503200-83508000	Weak transcription	Small Intestine	intestine
45	chr15:83503200-83508200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr15:83503200-83508600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr15:83503400-83510400	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr15:83503600-83514400	Weak transcription	K562	blood
49	chr15:83503600-83518200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr15:83503600-83518600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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