Variant report

Variant	rs2055891
Chromosome Location	chr15:83523163-83523164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83522860..83525020-chr15:83654105..83656593,2	MCF-7	breast:
2	chr15:83521559..83523474-chr15:83548872..83551411,2	MCF-7	breast:
3	chr15:83518647..83521952-chr15:83521961..83525177,3	K562	blood:

Variant related genes	Relation type
ENSG00000169612	Chromatin interaction
ENSG00000103942	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1010820	1.00[ASN][1000 genomes]
rs1105714	1.00[ASN][1000 genomes]
rs11259957	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11856299	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442894	1.00[ASN][1000 genomes]
rs17358518	1.00[ASN][1000 genomes]
rs17359001	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2019208	1.00[ASN][1000 genomes]
rs55800901	1.00[ASN][1000 genomes]
rs62011706	1.00[ASN][1000 genomes]
rs62011709	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62011712	1.00[ASN][1000 genomes]
rs62011735	1.00[ASN][1000 genomes]
rs62011742	1.00[ASN][1000 genomes]
rs62011744	1.00[ASN][1000 genomes]
rs67022650	1.00[ASN][1000 genomes]
rs7179000	1.00[ASN][1000 genomes]
rs72753993	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469557	chr15:83417763-83560629	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv482340	chr15:83417763-83560629	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv471687	chr15:83417764-83560629	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83504600-83549400	Weak transcription	Psoas Muscle	Psoas
2	chr15:83506000-83524200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:83506200-83527400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:83506200-83543800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr15:83507200-83539400	Weak transcription	Fetal Intestine Small	intestine
6	chr15:83513200-83532000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr15:83514400-83542800	Weak transcription	Primary T cells from cord blood	blood
8	chr15:83516000-83523400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:83518800-83524200	Weak transcription	Lung	lung
10	chr15:83519000-83523400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:83519000-83524200	Weak transcription	Left Ventricle	heart
12	chr15:83519000-83524400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:83519000-83524600	Weak transcription	Adipose Nuclei	Adipose
14	chr15:83519000-83524800	Weak transcription	Right Atrium	heart
15	chr15:83519000-83535800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr15:83519000-83541400	Weak transcription	Brain Anterior Caudate	brain
17	chr15:83519200-83523400	Weak transcription	Colon Smooth Muscle	Colon
18	chr15:83519200-83524200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr15:83519200-83524200	Weak transcription	Right Ventricle	heart
20	chr15:83519200-83524400	Strong transcription	Gastric	stomach
21	chr15:83519200-83528800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr15:83519200-83536200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr15:83519400-83525800	Strong transcription	Skeletal Muscle Male	skeletal muscle
24	chr15:83519600-83523400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr15:83519600-83523600	Strong transcription	Esophagus	oesophagus
26	chr15:83519600-83524200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:83519600-83524200	Weak transcription	HepG2	liver
28	chr15:83519600-83524200	Weak transcription	K562	blood
29	chr15:83519600-83525600	Weak transcription	HSMMtube	muscle
30	chr15:83519600-83529600	Weak transcription	Brain Substantia Nigra	brain
31	chr15:83519800-83523800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:83519800-83544400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr15:83520000-83524400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr15:83520000-83543600	Weak transcription	HSMM	muscle
35	chr15:83520000-83549800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr15:83520000-83563800	Weak transcription	Brain Hippocampus Middle	brain
37	chr15:83520200-83542000	Weak transcription	Brain Angular Gyrus	brain
38	chr15:83520200-83547000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr15:83520400-83523400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr15:83520600-83523400	Strong transcription	Stomach Smooth Muscle	stomach
41	chr15:83520600-83523600	Strong transcription	Fetal Stomach	stomach
42	chr15:83521000-83524200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:83521000-83524400	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr15:83521600-83524600	Weak transcription	Osteobl	bone
45	chr15:83521800-83523600	Genic enhancers	Pancreas	Pancrea
46	chr15:83521800-83524200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr15:83521800-83526400	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr15:83521800-83529400	Weak transcription	Primary B cells from cord blood	blood
49	chr15:83522000-83524200	Weak transcription	Primary B cells from peripheral blood	blood
50	chr15:83522000-83524400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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