Variant report

Variant	rs12437858
Chromosome Location	chr15:83744405-83744406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:83619924..83621935-chr15:83742474..83744523,2	MCF-7	breast:
2	chr15:83739821..83742746-chr15:83743126..83746658,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103942	Chromatin interaction

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs1010820	0.83[EUR][1000 genomes]
rs10520576	0.82[EUR][1000 genomes]
rs1075619	0.83[EUR][1000 genomes]
rs1112404	0.83[EUR][1000 genomes]
rs11259965	0.82[EUR][1000 genomes]
rs11259968	0.83[EUR][1000 genomes]
rs11259970	0.83[EUR][1000 genomes]
rs11852408	0.83[EUR][1000 genomes]
rs11852446	0.83[EUR][1000 genomes]
rs11852496	0.80[EUR][1000 genomes]
rs11853498	0.83[EUR][1000 genomes]
rs11854888	0.82[EUR][1000 genomes]
rs11855639	0.82[EUR][1000 genomes]
rs11856164	0.83[EUR][1000 genomes]
rs11856806	0.83[EUR][1000 genomes]
rs11857428	0.85[EUR][1000 genomes]
rs11857641	0.82[EUR][1000 genomes]
rs11858162	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11858377	0.85[EUR][1000 genomes]
rs11858468	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12437558	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12437901	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12438398	0.82[EUR][1000 genomes]
rs12438575	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12439903	0.83[EUR][1000 genomes]
rs12440265	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12440386	0.85[EUR][1000 genomes]
rs12440562	0.82[EUR][1000 genomes]
rs12441006	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12441409	0.83[EUR][1000 genomes]
rs12441575	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12441847	0.83[EUR][1000 genomes]
rs12442894	0.81[EUR][1000 genomes]
rs12443109	0.83[EUR][1000 genomes]
rs12443424	0.83[EUR][1000 genomes]
rs12591855	0.83[EUR][1000 genomes]
rs12593532	0.82[EUR][1000 genomes]
rs12593638	0.80[EUR][1000 genomes]
rs12595330	0.83[EUR][1000 genomes]
rs17361375	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs17507693	0.84[EUR][1000 genomes]
rs17507763	0.84[EUR][1000 genomes]
rs17508610	0.82[EUR][1000 genomes]
rs17509233	0.83[EUR][1000 genomes]
rs17567151	0.82[EUR][1000 genomes]
rs17567869	0.80[EUR][1000 genomes]
rs17568298	0.83[EUR][1000 genomes]
rs17568459	0.83[EUR][1000 genomes]
rs2034618	0.84[EUR][1000 genomes]
rs4408505	0.81[EUR][1000 genomes]
rs4423388	0.81[EUR][1000 genomes]
rs4563011	0.81[EUR][1000 genomes]
rs4572349	0.83[EUR][1000 genomes]
rs55683536	0.83[EUR][1000 genomes]
rs55756182	0.81[EUR][1000 genomes]
rs55878453	0.81[EUR][1000 genomes]
rs56045305	0.82[EUR][1000 genomes]
rs56052029	0.82[EUR][1000 genomes]
rs56352317	0.82[EUR][1000 genomes]
rs57219675	0.83[EUR][1000 genomes]
rs57729044	0.83[EUR][1000 genomes]
rs58006707	0.83[EUR][1000 genomes]
rs58281154	0.83[EUR][1000 genomes]
rs58396076	0.88[EUR][1000 genomes]
rs59896565	0.83[EUR][1000 genomes]
rs60344060	0.83[EUR][1000 genomes]
rs60819629	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61267530	0.81[EUR][1000 genomes]
rs62010162	0.97[EUR][1000 genomes]
rs62010164	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62010165	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62010166	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62010170	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62010172	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62010173	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62010174	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62010175	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62010177	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62010212	0.84[EUR][1000 genomes]
rs62010214	0.82[EUR][1000 genomes]
rs62010215	0.83[EUR][1000 genomes]
rs62010220	0.83[EUR][1000 genomes]
rs62010248	0.83[EUR][1000 genomes]
rs62010252	0.83[EUR][1000 genomes]
rs62010254	0.83[EUR][1000 genomes]
rs62010255	0.83[EUR][1000 genomes]
rs62010258	0.83[EUR][1000 genomes]
rs62011742	0.84[EUR][1000 genomes]
rs62011744	0.88[EUR][1000 genomes]
rs62011869	0.85[EUR][1000 genomes]
rs62025914	0.81[EUR][1000 genomes]
rs62025915	0.81[EUR][1000 genomes]
rs66619192	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66757932	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67022650	0.85[EUR][1000 genomes]
rs7164083	0.82[EUR][1000 genomes]
rs7165114	0.83[EUR][1000 genomes]
rs7165978	0.82[EUR][1000 genomes]
rs72755992	0.83[EUR][1000 genomes]
rs7495630	0.83[EUR][1000 genomes]
rs7495911	0.83[EUR][1000 genomes]
rs8027577	0.83[EUR][1000 genomes]
rs8031723	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8035852	0.92[AFR][1000 genomes]
rs8038486	0.82[EUR][1000 genomes]
rs8043224	0.85[EUR][1000 genomes]
rs965263	0.83[EUR][1000 genomes]
rs965264	0.82[EUR][1000 genomes]
rs9707895	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv3338509	chr15:83740748-83744946	Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83744200-83745400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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