Variant report

Variant	rs11853498
Chromosome Location	chr15:83872713-83872714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83733142..83737236-chr15:83872525..83879828,15	MCF-7	breast:
2	chr15:83678154..83684518-chr15:83871554..83879371,12	MCF-7	breast:
3	chr15:83733314..83735882-chr15:83870661..83874279,4	K562	blood:
4	chr15:83733314..83737988-chr15:83872344..83875458,5	K562	blood:
5	chr15:83734651..83737129-chr15:83872605..83874333,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260608	Chromatin interaction
ENSG00000263643	Chromatin interaction
ENSG00000064726	Chromatin interaction
ENSG00000249214	Chromatin interaction
ENSG00000169609	Chromatin interaction

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:144)

rs_ID	r²[population]
rs1045742	0.89[CEU][hapmap]
rs10520576	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1075619	1.00[CEU][hapmap];0.89[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1112404	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11259905	0.88[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11259965	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11259967	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11259968	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11259969	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11259970	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11852287	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11852408	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11852446	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11852496	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11854888	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11855639	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11855722	1.00[ASN][1000 genomes]
rs11856164	1.00[CEU][hapmap];0.80[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11856806	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11857428	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11857641	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11858162	0.94[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858377	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11858468	0.94[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437558	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437858	0.83[EUR][1000 genomes]
rs12437901	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438398	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12438526	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438575	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438708	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12439122	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12439903	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12440265	0.94[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12440386	0.89[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12440562	1.00[CEU][hapmap];0.80[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441006	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441409	1.00[CEU][hapmap];0.81[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441575	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441847	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12441907	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12443109	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12443424	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12591855	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12593532	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12593638	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12595330	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17361375	0.94[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17507693	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17507763	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17508610	1.00[CEU][hapmap];0.80[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17509233	1.00[CEU][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17567151	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17567869	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17568298	1.00[CEU][hapmap];0.80[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17568459	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1877024	1.00[ASN][1000 genomes]
rs1880532	0.83[EUR][1000 genomes]
rs1901544	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2034618	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3915139	1.00[ASN][1000 genomes]
rs41326445	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs4300612	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4389108	0.82[AMR][1000 genomes]
rs4408505	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4423388	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4480763	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4547301	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4563011	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4572349	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55683536	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55691648	1.00[ASN][1000 genomes]
rs55756182	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55878453	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55893521	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55905779	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55932429	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55933526	1.00[ASN][1000 genomes]
rs56045305	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56052029	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56352317	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57219675	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57729044	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58006707	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58281154	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58396076	1.00[ASN][1000 genomes]
rs58847484	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59828448	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59896565	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60344060	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60819629	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61267530	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62010162	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010164	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010165	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010166	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010170	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010172	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010173	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010174	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010175	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010177	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010208	1.00[ASN][1000 genomes]
rs62010212	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62010214	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62010215	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62010220	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010247	1.00[ASN][1000 genomes]
rs62010248	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62010252	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010254	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010255	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62010258	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62011869	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62025861	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs62025914	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62025915	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62025919	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62025921	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62025923	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6603042	1.00[ASN][1000 genomes]
rs66619192	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66757932	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67933024	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7164083	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7165114	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7165978	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7166078	1.00[ASN][1000 genomes]
rs7172590	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7179675	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7180692	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7183171	1.00[ASN][1000 genomes]
rs72755992	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7495630	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7495911	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8027577	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8031723	0.94[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8033380	1.00[ASN][1000 genomes]
rs8037783	0.80[CEU][hapmap]
rs8038486	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8043224	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs965263	1.00[CEU][hapmap];0.80[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965264	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9707895	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83837000-83873600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:83847400-83873400	Weak transcription	Fetal Kidney	kidney
3	chr15:83861000-83873600	Weak transcription	Left Ventricle	heart
4	chr15:83861000-83873600	Weak transcription	Right Atrium	heart
5	chr15:83862800-83875200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:83863600-83873400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:83863600-83874400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr15:83864000-83873000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr15:83864000-83873400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr15:83866000-83873400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:83866000-83873400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr15:83867600-83873200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr15:83867800-83873000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr15:83867800-83873400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:83867800-83874800	Weak transcription	Ovary	ovary
16	chr15:83868200-83874600	Weak transcription	Primary T cells from cord blood	blood
17	chr15:83869600-83872800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:83869600-83873000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:83869600-83873400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:83869600-83873600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:83869600-83874800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr15:83869800-83873400	Weak transcription	NH-A	brain
23	chr15:83870200-83873000	Enhancers	HUVEC	blood vessel
24	chr15:83870600-83873600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr15:83870600-83875400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr15:83870800-83872800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr15:83870800-83873600	Weak transcription	Brain Hippocampus Middle	brain
28	chr15:83870800-83873600	Weak transcription	NHDF-Ad	bronchial
29	chr15:83870800-83874400	Weak transcription	Hela-S3	cervix
30	chr15:83871000-83874600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr15:83871200-83873400	Weak transcription	A549	lung
32	chr15:83871200-83873400	Weak transcription	HMEC	breast
33	chr15:83871200-83873600	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr15:83871200-83873600	Weak transcription	HSMM	muscle
35	chr15:83871400-83873600	Weak transcription	Aorta	Aorta
36	chr15:83871400-83875000	Weak transcription	Adipose Nuclei	Adipose
37	chr15:83871600-83873000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr15:83871600-83873200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr15:83871600-83873400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr15:83871600-83874600	Weak transcription	Brain Substantia Nigra	brain
41	chr15:83871800-83873400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:83871800-83873400	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr15:83871800-83873400	Weak transcription	Fetal Heart	heart
44	chr15:83871800-83873400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr15:83871800-83873600	Weak transcription	HSMMtube	muscle
46	chr15:83871800-83873600	Weak transcription	NHLF	lung
47	chr15:83872000-83873000	Weak transcription	Fetal Lung	lung
48	chr15:83872000-83873400	Weak transcription	Colon Smooth Muscle	Colon
49	chr15:83872000-83873400	Weak transcription	NHEK	skin
50	chr15:83872000-83873600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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