Variant report

Variant	rs1045742
Chromosome Location	chr15:83685314-83685315
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:83682685-83685447	K562	blood:	n/a	n/a
2	POLR2A	chr15:83682363-83686962	K562	blood:	n/a	n/a
3	POLR2A	chr15:83685157-83686029	HepG2	liver:	n/a	n/a
4	POLR2A	chr15:83685301-83685316	K562	blood:	n/a	n/a
5	POLR2A	chr15:83685242-83685523	GM12878	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:83684589..83686265-chr15:83730370..83733896,3	K562	blood:
2	chr15:83679205..83686226-chr15:83733349..83739878,12	K562	blood:
3	chr15:83684703..83687598-chr15:83730655..83733296,2	K562	blood:
4	chr15:83684576..83687517-chr15:83693136..83695627,2	K562	blood:

No data

Variant related genes	Relation type
C15orf40	TF binding region
ENSG00000064726	Chromatin interaction
ENSG00000263643	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1010820	0.82[CEU][hapmap];0.84[YRI][hapmap]
rs10520576	0.88[CEU][hapmap]
rs1075619	0.88[CEU][hapmap]
rs1112404	0.88[CEU][hapmap]
rs11259965	0.89[CEU][hapmap]
rs11259969	0.89[CEU][hapmap]
rs11852408	0.89[CEU][hapmap]
rs11852496	0.88[CEU][hapmap]
rs11853498	0.89[CEU][hapmap]
rs11856164	0.88[CEU][hapmap]
rs11857641	0.94[CEU][hapmap]
rs11858162	0.94[CEU][hapmap];0.84[YRI][hapmap]
rs11858377	0.88[CEU][hapmap]
rs11858468	0.94[CEU][hapmap]
rs12440265	0.94[CEU][hapmap]
rs12440562	0.88[CEU][hapmap]
rs12441409	0.89[CEU][hapmap]
rs12442894	0.82[CEU][hapmap]
rs12443109	0.88[CEU][hapmap]
rs12591855	0.88[CEU][hapmap]
rs12593638	0.88[CEU][hapmap]
rs12595330	0.88[CEU][hapmap]
rs17361375	0.94[CEU][hapmap];0.84[YRI][hapmap]
rs17508610	0.88[CEU][hapmap]
rs17509233	0.89[CEU][hapmap]
rs17567151	0.89[CEU][hapmap]
rs17567869	0.88[CEU][hapmap]
rs17568298	0.88[CEU][hapmap]
rs17568459	0.88[CEU][hapmap]
rs2034618	0.89[CEU][hapmap]
rs41326445	0.88[CEU][hapmap]
rs4563011	0.88[CEU][hapmap]
rs7164083	1.00[CEU][hapmap]
rs7165114	0.88[CEU][hapmap]
rs7165978	0.88[CEU][hapmap]
rs7495630	0.89[CEU][hapmap]
rs7495911	0.88[CEU][hapmap]
rs8027577	0.88[CEU][hapmap]
rs8031723	0.94[CEU][hapmap];0.84[YRI][hapmap]
rs8038486	0.88[CEU][hapmap]
rs8043224	0.88[CEU][hapmap]
rs965263	0.88[CEU][hapmap]
rs965264	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83680800-83688800	Weak transcription	Aorta	Aorta
2	chr15:83681000-83700200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:83681000-83705000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:83681200-83686000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr15:83681200-83687400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:83681200-83688800	Weak transcription	Psoas Muscle	Psoas
7	chr15:83681200-83693400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr15:83681200-83698200	Weak transcription	NHLF	lung
9	chr15:83681200-83710200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:83681400-83685400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr15:83681400-83685800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr15:83681400-83685800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:83681400-83685800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:83681400-83685800	Weak transcription	Liver	Liver
15	chr15:83681400-83685800	Weak transcription	Brain Hippocampus Middle	brain
16	chr15:83681400-83685800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr15:83681400-83685800	Weak transcription	Placenta	Placenta
18	chr15:83681400-83685800	Weak transcription	NH-A	brain
19	chr15:83681400-83687200	Weak transcription	Colonic Mucosa	Colon
20	chr15:83681400-83698000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr15:83681400-83698400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr15:83681600-83685400	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr15:83681600-83685400	Weak transcription	Primary B cells from cord blood	blood
24	chr15:83681600-83685400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr15:83681600-83685400	Weak transcription	HMEC	breast
26	chr15:83681600-83685800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr15:83681600-83685800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr15:83681600-83685800	Weak transcription	Colon Smooth Muscle	Colon
29	chr15:83681600-83685800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr15:83681600-83685800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr15:83681600-83685800	Weak transcription	HSMMtube	muscle
32	chr15:83681600-83685800	Weak transcription	NHEK	skin
33	chr15:83681600-83685800	Weak transcription	Osteobl	bone
34	chr15:83681600-83686800	Weak transcription	Brain Substantia Nigra	brain
35	chr15:83681600-83687200	Weak transcription	Brain Angular Gyrus	brain
36	chr15:83681600-83687200	Weak transcription	Small Intestine	intestine
37	chr15:83681600-83687400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr15:83681600-83688800	Weak transcription	Brain Anterior Caudate	brain
39	chr15:83681600-83688800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr15:83681600-83698200	Weak transcription	Brain Cingulate Gyrus	brain
41	chr15:83681600-83698200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr15:83681600-83732000	Weak transcription	Stomach Mucosa	stomach
43	chr15:83681800-83685600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr15:83681800-83685800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr15:83681800-83687200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr15:83681800-83687200	Weak transcription	HepG2	liver
47	chr15:83681800-83687400	Weak transcription	Fetal Stomach	stomach
48	chr15:83681800-83687400	Weak transcription	Right Ventricle	heart
49	chr15:83681800-83689000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr15:83682000-83685800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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