Variant report

Variant	rs41326445
Chromosome Location	chr15:83803546-83803547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83783660..83786055-chr15:83802472..83804765,2	K562	blood:
2	chr15:83802274..83803889-chr15:83804341..83806037,2	K562	blood:
3	chr15:83802505..83804688-chr15:83825442..83827485,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BTBD1-2	chr15:83802878-83805473	NONHSAT047895

Variant related genes	Relation type
ENSG00000166503	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1010820	0.82[CEU][hapmap];0.96[TSI][hapmap]
rs1045742	0.88[CEU][hapmap]
rs10520576	1.00[CEU][hapmap];0.96[TSI][hapmap]
rs1075619	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];0.95[MKK][hapmap];0.93[TSI][hapmap]
rs1112404	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs11259905	0.88[CEU][hapmap];0.89[TSI][hapmap]
rs11259965	1.00[CEU][hapmap]
rs11259969	1.00[CEU][hapmap]
rs11852408	1.00[CEU][hapmap]
rs11852496	1.00[CEU][hapmap];0.93[TSI][hapmap]
rs11853498	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs11856164	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap]
rs11857428	1.00[CEU][hapmap]
rs11857641	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs11858162	0.94[CEU][hapmap]
rs11858377	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs11858468	0.94[CEU][hapmap];0.83[GIH][hapmap];0.93[TSI][hapmap]
rs12439122	0.87[GIH][hapmap];0.81[TSI][hapmap]
rs12440265	0.94[CEU][hapmap];0.82[GIH][hapmap];0.93[TSI][hapmap]
rs12440386	0.89[CEU][hapmap];0.96[TSI][hapmap]
rs12440562	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.90[YRI][hapmap]
rs12441409	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs12443109	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs12591855	1.00[CEU][hapmap]
rs12593638	1.00[CEU][hapmap];0.93[TSI][hapmap]
rs12595330	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17361375	0.94[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap]
rs17508610	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.96[TSI][hapmap];0.90[YRI][hapmap]
rs17509233	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs17567151	1.00[CEU][hapmap]
rs17567869	1.00[CEU][hapmap];0.93[TSI][hapmap]
rs17568298	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap]
rs17568459	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2034618	1.00[CEU][hapmap]
rs4480763	0.88[CEU][hapmap];0.93[GIH][hapmap];0.89[TSI][hapmap]
rs4563011	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7164083	1.00[CEU][hapmap]
rs7165114	1.00[CEU][hapmap]
rs7165978	1.00[CEU][hapmap];0.96[TSI][hapmap]
rs7495630	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs7495911	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs8027577	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs8031723	0.94[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap]
rs8038486	1.00[CEU][hapmap];0.96[TSI][hapmap]
rs8043224	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs965263	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap]
rs965264	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83777200-83834600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:83778200-83806400	Weak transcription	Dnd41	blood
3	chr15:83779400-83812800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:83780000-83810000	Weak transcription	Fetal Lung	lung
5	chr15:83781000-83808200	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr15:83781000-83808200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr15:83781200-83827200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr15:83781400-83809800	Weak transcription	Brain Substantia Nigra	brain
9	chr15:83782000-83825000	Weak transcription	Psoas Muscle	Psoas
10	chr15:83782200-83812400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr15:83782400-83803600	Weak transcription	Brain Anterior Caudate	brain
12	chr15:83782600-83833600	Weak transcription	Right Ventricle	heart
13	chr15:83783200-83812400	Weak transcription	Brain Angular Gyrus	brain
14	chr15:83783200-83812800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:83783400-83812800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr15:83783800-83832400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr15:83787000-83812200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr15:83788600-83815000	Weak transcription	Pancreas	Pancrea
19	chr15:83790000-83806400	Weak transcription	Fetal Kidney	kidney
20	chr15:83790400-83803600	Weak transcription	Colon Smooth Muscle	Colon
21	chr15:83790400-83804600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr15:83791600-83805400	Strong transcription	Skeletal Muscle Female	skeletal muscle
23	chr15:83791600-83813400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr15:83792600-83807200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr15:83792800-83835200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr15:83793800-83812400	Weak transcription	Thymus	Thymus
27	chr15:83794600-83827400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr15:83796000-83808400	Strong transcription	HUVEC	blood vessel
29	chr15:83796200-83803800	Strong transcription	Fetal Muscle Leg	muscle
30	chr15:83796200-83804400	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr15:83796200-83812400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr15:83796200-83826800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr15:83796200-83832000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:83796400-83811800	Weak transcription	Fetal Intestine Small	intestine
35	chr15:83796400-83812200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr15:83796400-83833000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:83796600-83807600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr15:83797000-83807000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr15:83797000-83809200	Weak transcription	Liver	Liver
40	chr15:83797200-83806400	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr15:83797200-83806400	Weak transcription	Osteobl	bone
42	chr15:83797200-83812400	Weak transcription	Primary T cells from cord blood	blood
43	chr15:83797400-83810000	Weak transcription	Fetal Brain Male	brain
44	chr15:83797600-83806400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr15:83797600-83831800	Weak transcription	Fetal Thymus	thymus
46	chr15:83797800-83832800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr15:83798000-83809600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr15:83798400-83806000	Strong transcription	HSMM	muscle
49	chr15:83798600-83803800	Strong transcription	Fetal Muscle Trunk	muscle
50	chr15:83798600-83812400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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