Variant report

Variant	rs62010255
Chromosome Location	chr15:83874043-83874044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:83872736..83874243-chr15:83878756..83880256,2	K562	blood:
2	chr15:83733142..83737236-chr15:83872525..83879828,15	MCF-7	breast:
3	chr15:83872743..83874594-chr15:83878375..83880256,2	K562	blood:
4	chr15:83678154..83684518-chr15:83871554..83879371,12	MCF-7	breast:
5	chr15:83797822..83799422-chr15:83873732..83875902,2	K562	blood:
6	chr15:83733314..83735882-chr15:83870661..83874279,4	K562	blood:
7	chr15:83733314..83737988-chr15:83872344..83875458,5	K562	blood:
8	chr15:83826728..83828298-chr15:83873729..83876383,2	MCF-7	breast:
9	chr15:83734651..83737129-chr15:83872605..83874333,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000260608	Chromatin interaction
ENSG00000249214	Chromatin interaction
ENSG00000263643	Chromatin interaction
ENSG00000169609	Chromatin interaction
ENSG00000166503	Chromatin interaction
ENSG00000064726	Chromatin interaction

Extended variants
information (count: 174 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:173)

rs_ID	r²[population]
rs10520576	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1075619	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1112404	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11259903	1.00[ASN][1000 genomes]
rs11259905	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11259906	0.95[ASN][1000 genomes]
rs11259965	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11259967	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11259968	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11259969	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11259970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11852287	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11852408	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11852446	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11852496	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11853498	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11853977	0.93[ASN][1000 genomes]
rs11854520	0.95[ASN][1000 genomes]
rs11854888	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11855639	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11856000	0.89[ASN][1000 genomes]
rs11856164	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11856171	0.89[ASN][1000 genomes]
rs11856806	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11857428	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11857641	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11857878	0.81[ASN][1000 genomes]
rs11858162	0.85[EUR][1000 genomes]
rs11858377	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11858468	0.83[EUR][1000 genomes]
rs12437558	0.85[EUR][1000 genomes]
rs12437858	0.83[EUR][1000 genomes]
rs12437901	0.85[EUR][1000 genomes]
rs12438398	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12438526	0.84[EUR][1000 genomes]
rs12438575	0.85[EUR][1000 genomes]
rs12438708	0.84[EUR][1000 genomes]
rs12439122	0.85[EUR][1000 genomes]
rs12439903	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12440265	0.85[EUR][1000 genomes]
rs12440386	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12440562	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12441006	0.85[EUR][1000 genomes]
rs12441409	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12441575	0.85[EUR][1000 genomes]
rs12441585	0.92[ASN][1000 genomes]
rs12441847	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441907	0.81[AMR][1000 genomes]
rs12442572	1.00[ASN][1000 genomes]
rs12443109	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12443424	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12591855	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12593532	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12593638	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12594496	0.93[ASN][1000 genomes]
rs12595330	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17158080	0.92[ASN][1000 genomes]
rs17361375	0.85[EUR][1000 genomes]
rs17507693	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17507763	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17508610	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17509233	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17567151	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17567869	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17568298	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17568459	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1880532	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1901544	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2034617	0.92[ASN][1000 genomes]
rs2034618	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28373753	0.95[ASN][1000 genomes]
rs28436027	0.87[ASN][1000 genomes]
rs28623260	0.95[ASN][1000 genomes]
rs28625676	1.00[ASN][1000 genomes]
rs28678434	0.92[ASN][1000 genomes]
rs28754750	0.92[ASN][1000 genomes]
rs4300612	0.84[AMR][1000 genomes]
rs4341707	0.92[ASN][1000 genomes]
rs4386103	0.92[ASN][1000 genomes]
rs4389108	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4408505	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4423388	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4480763	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4531702	0.92[ASN][1000 genomes]
rs4547301	0.84[AMR][1000 genomes]
rs4563011	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4572349	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55683536	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55756182	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55878453	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55893521	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55905779	0.84[EUR][1000 genomes]
rs55932429	0.84[EUR][1000 genomes]
rs56045305	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56052029	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56352317	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56391827	0.85[ASN][1000 genomes]
rs57219675	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57729044	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58006707	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58281154	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58292616	0.93[ASN][1000 genomes]
rs58847484	0.82[EUR][1000 genomes]
rs59828448	0.81[EUR][1000 genomes]
rs59896565	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60344060	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60819629	0.85[EUR][1000 genomes]
rs60935326	0.90[ASN][1000 genomes]
rs61267530	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61323939	0.85[ASN][1000 genomes]
rs62010162	0.83[EUR][1000 genomes]
rs62010164	0.85[EUR][1000 genomes]
rs62010165	0.85[EUR][1000 genomes]
rs62010166	0.85[EUR][1000 genomes]
rs62010170	0.82[EUR][1000 genomes]
rs62010172	0.81[EUR][1000 genomes]
rs62010173	0.85[EUR][1000 genomes]
rs62010174	0.83[EUR][1000 genomes]
rs62010175	0.85[EUR][1000 genomes]
rs62010177	0.83[EUR][1000 genomes]
rs62010212	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62010214	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62010215	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62010220	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62010248	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62010252	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62010254	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62010258	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011869	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62025861	0.84[AMR][1000 genomes]
rs62025914	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62025915	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62025919	0.84[EUR][1000 genomes]
rs62025921	0.84[EUR][1000 genomes]
rs62025923	0.81[EUR][1000 genomes]
rs6602970	0.95[ASN][1000 genomes]
rs6603047	0.90[ASN][1000 genomes]
rs66619192	0.85[EUR][1000 genomes]
rs66757932	0.83[EUR][1000 genomes]
rs67933024	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7164083	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7165114	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7165978	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7172590	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7173166	0.95[ASN][1000 genomes]
rs7179675	0.83[EUR][1000 genomes]
rs7180407	0.95[ASN][1000 genomes]
rs7180692	0.85[EUR][1000 genomes]
rs72755992	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73437314	0.93[ASN][1000 genomes]
rs73437324	0.93[ASN][1000 genomes]
rs73437329	0.93[ASN][1000 genomes]
rs73437330	0.93[ASN][1000 genomes]
rs73438913	0.99[ASN][1000 genomes]
rs73438921	0.92[ASN][1000 genomes]
rs73438937	0.93[ASN][1000 genomes]
rs73438941	0.93[ASN][1000 genomes]
rs73438962	0.93[ASN][1000 genomes]
rs73455410	0.90[ASN][1000 genomes]
rs73455413	0.90[ASN][1000 genomes]
rs73455451	0.93[ASN][1000 genomes]
rs7495630	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7495911	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8027193	1.00[ASN][1000 genomes]
rs8027577	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8031723	0.85[EUR][1000 genomes]
rs8035810	0.92[ASN][1000 genomes]
rs8037783	0.90[ASN][1000 genomes]
rs8038486	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8043224	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs965263	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs965264	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9707895	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83862800-83875200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:83863600-83874400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr15:83867800-83874800	Weak transcription	Ovary	ovary
4	chr15:83868200-83874600	Weak transcription	Primary T cells from cord blood	blood
5	chr15:83869600-83874800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr15:83870600-83875400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr15:83870800-83874400	Weak transcription	Hela-S3	cervix
8	chr15:83871000-83874600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:83871400-83875000	Weak transcription	Adipose Nuclei	Adipose
10	chr15:83871600-83874600	Weak transcription	Brain Substantia Nigra	brain
11	chr15:83872000-83877200	Active TSS	GM12878-XiMat	blood
12	chr15:83872200-83874600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr15:83872800-83874200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr15:83872800-83874600	Enhancers	Fetal Brain Male	brain
15	chr15:83873000-83874400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr15:83873000-83874600	Enhancers	Fetal Lung	lung
17	chr15:83873000-83874800	Flanking Active TSS	HUVEC	blood vessel
18	chr15:83873000-83875000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr15:83873200-83874400	Enhancers	Brain Angular Gyrus	brain
20	chr15:83873200-83874400	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr15:83873400-83874200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:83873400-83874200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:83873400-83874200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr15:83873400-83874200	Flanking Active TSS	K562	blood
25	chr15:83873400-83874400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr15:83873400-83874400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr15:83873400-83874400	Enhancers	Colon Smooth Muscle	Colon
28	chr15:83873400-83874400	Enhancers	Fetal Heart	heart
29	chr15:83873400-83874400	Enhancers	Fetal Kidney	kidney
30	chr15:83873400-83874400	Enhancers	A549	lung
31	chr15:83873400-83874400	Enhancers	NHEK	skin
32	chr15:83873400-83874600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:83873400-83874600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr15:83873400-83874600	Enhancers	Brain Anterior Caudate	brain
35	chr15:83873400-83874600	Enhancers	Brain Cingulate Gyrus	brain
36	chr15:83873400-83874600	Enhancers	Rectal Smooth Muscle	rectum
37	chr15:83873400-83874800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr15:83873400-83875000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
39	chr15:83873400-83875000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
40	chr15:83873400-83875000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr15:83873400-83875400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr15:83873400-83877600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr15:83873600-83874200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
44	chr15:83873600-83874200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
45	chr15:83873600-83874200	Flanking Active TSS	Fetal Brain Female	brain
46	chr15:83873600-83874400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr15:83873600-83874400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr15:83873600-83874400	Enhancers	Osteobl	bone
49	chr15:83873600-83874600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr15:83873600-83874600	Enhancers	Fetal Stomach	stomach

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