Variant report

Variant	rs8035852
Chromosome Location	chr15:83701973-83701974
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11858162	0.89[AFR][1000 genomes]
rs12437558	0.95[AFR][1000 genomes]
rs12437858	0.92[AFR][1000 genomes]
rs12437901	0.97[AFR][1000 genomes]
rs12441575	0.97[AFR][1000 genomes]
rs17361375	0.95[AFR][1000 genomes]
rs55691648	0.84[EUR][1000 genomes]
rs55933526	0.88[EUR][1000 genomes]
rs60819629	0.97[AFR][1000 genomes]
rs62010164	0.94[AFR][1000 genomes]
rs62010165	0.97[AFR][1000 genomes]
rs62010166	0.97[AFR][1000 genomes]
rs62010170	0.97[AFR][1000 genomes]
rs62010172	0.93[AFR][1000 genomes]
rs62010173	0.90[AFR][1000 genomes]
rs62010175	0.90[AFR][1000 genomes]
rs66619192	0.97[AFR][1000 genomes]
rs66757932	0.86[AFR][1000 genomes]
rs8031723	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83681000-83705000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:83681200-83710200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:83681600-83732000	Weak transcription	Stomach Mucosa	stomach
4	chr15:83682000-83708400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:83682200-83708600	Weak transcription	Fetal Heart	heart
6	chr15:83683000-83723000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:83683400-83726600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:83687000-83708200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr15:83687600-83709600	Weak transcription	Brain Angular Gyrus	brain
10	chr15:83688800-83708800	Weak transcription	Fetal Brain Male	brain
11	chr15:83689200-83705200	Weak transcription	Psoas Muscle	Psoas
12	chr15:83689400-83705000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:83689400-83708600	Weak transcription	NHEK	skin
14	chr15:83690000-83708200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:83690000-83708800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr15:83690400-83708000	Weak transcription	Brain Germinal Matrix	brain
17	chr15:83692000-83702000	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr15:83692400-83702200	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr15:83693200-83702200	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr15:83693200-83702800	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr15:83695000-83703200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr15:83695000-83704000	Strong transcription	Primary B cells from peripheral blood	blood
23	chr15:83695000-83704200	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr15:83695400-83714600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr15:83695600-83702000	Strong transcription	Primary B cells from cord blood	blood
26	chr15:83695800-83715400	Weak transcription	HSMMtube	muscle
27	chr15:83696200-83702200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr15:83696200-83702600	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr15:83696200-83702800	Strong transcription	Fetal Thymus	thymus
30	chr15:83696400-83702000	Strong transcription	Liver	Liver
31	chr15:83696400-83708200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr15:83697000-83705000	Weak transcription	Fetal Kidney	kidney
33	chr15:83697600-83705200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr15:83697800-83721000	Strong transcription	Fetal Intestine Large	intestine
35	chr15:83698200-83703200	Strong transcription	Fetal Muscle Leg	muscle
36	chr15:83698400-83708600	Weak transcription	Brain Anterior Caudate	brain
37	chr15:83698600-83708200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr15:83698600-83709600	Weak transcription	Colon Smooth Muscle	Colon
39	chr15:83698800-83705000	Weak transcription	Brain Cingulate Gyrus	brain
40	chr15:83698800-83705200	Weak transcription	Fetal Lung	lung
41	chr15:83698800-83705400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr15:83698800-83708200	Weak transcription	HUVEC	blood vessel
43	chr15:83698800-83708600	Weak transcription	HMEC	breast
44	chr15:83698800-83712000	Weak transcription	Colonic Mucosa	Colon
45	chr15:83699000-83705000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr15:83699000-83705000	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr15:83699000-83707400	Weak transcription	Rectal Smooth Muscle	rectum
48	chr15:83699000-83708200	Weak transcription	Left Ventricle	heart
49	chr15:83699000-83708200	Weak transcription	Ovary	ovary
50	chr15:83699000-83708200	Weak transcription	Right Ventricle	heart

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