Variant report

Variant	rs17295332
Chromosome Location	chr3:59758993-59758994
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11130732	0.91[CEU][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11130733	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17296168	0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17361780	0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67998456	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs685970	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs780358	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs780366	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs780367	0.84[CEU][hapmap]
rs780368	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs812964	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1003387	chr3:59756364-59831340	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59755600-59761400	Enhancers	Fetal Thymus	thymus
2	chr3:59756200-59760400	Enhancers	Primary hematopoietic stem cells	blood
3	chr3:59756400-59761200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:59756600-59759400	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:59756600-59761200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:59756800-59763600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:59757000-59759600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:59757200-59759000	Enhancers	NH-A	brain
9	chr3:59757200-59760000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:59757200-59760200	Enhancers	Primary T cells fromperipheralblood	blood
11	chr3:59757200-59761200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:59757400-59760000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:59757600-59759600	Enhancers	Primary B cells from peripheral blood	blood
14	chr3:59757800-59759000	Flanking Active TSS	Thymus	Thymus
15	chr3:59757800-59762200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:59758000-59759400	Enhancers	Primary B cells from cord blood	blood
17	chr3:59758000-59759400	Weak transcription	HSMMtube	muscle
18	chr3:59758000-59759600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr3:59758000-59759600	Flanking Active TSS	Dnd41	blood
20	chr3:59758000-59759600	Enhancers	GM12878-XiMat	blood
21	chr3:59758000-59759800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:59758000-59760000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:59758000-59760400	Weak transcription	NHEK	skin
24	chr3:59758000-59761200	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr3:59758200-59759000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:59758200-59759400	Flanking Active TSS	Primary T cells from cord blood	blood
27	chr3:59758200-59759800	Weak transcription	NHDF-Ad	bronchial
28	chr3:59758200-59760000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr3:59758400-59759200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
30	chr3:59758400-59759200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
31	chr3:59758400-59759200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr3:59758400-59759400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr3:59758400-59759800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:59758400-59759800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr3:59758400-59759800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:59758400-59760000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr3:59758400-59760000	Weak transcription	A549	lung
38	chr3:59758600-59759000	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr3:59758600-59759000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr3:59758600-59759000	Weak transcription	HSMM	muscle
41	chr3:59758600-59759200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
42	chr3:59758600-59759200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr3:59758600-59759800	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr3:59758800-59759200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
45	chr3:59758800-59759400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr3:59758800-59759800	Weak transcription	HMEC	breast
47	chr3:59758800-59759800	Weak transcription	Osteobl	bone
48	chr3:59758800-59760000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr3:59758800-59760800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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