Variant report

Variant	rs812964
Chromosome Location	chr3:59757883-59757884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17295332	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17361780	0.82[EUR][1000 genomes]
rs780358	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1003387	chr3:59756364-59831340	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs812964	C3orf67	cis	parietal	SCAN

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59755600-59761400	Enhancers	Fetal Thymus	thymus
2	chr3:59756000-59758000	Weak transcription	GM12878-XiMat	blood
3	chr3:59756200-59760400	Enhancers	Primary hematopoietic stem cells	blood
4	chr3:59756400-59758000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:59756400-59761200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:59756600-59758200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:59756600-59758200	Enhancers	NHDF-Ad	bronchial
8	chr3:59756600-59758800	Enhancers	Osteobl	bone
9	chr3:59756600-59759400	Weak transcription	Fetal Muscle Leg	muscle
10	chr3:59756600-59761200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr3:59756800-59758200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:59756800-59758600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr3:59756800-59758800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr3:59756800-59758800	Enhancers	HMEC	breast
15	chr3:59756800-59763600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:59757000-59758000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:59757000-59758000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:59757000-59758000	Enhancers	Dnd41	blood
19	chr3:59757000-59758200	Enhancers	Primary T cells from cord blood	blood
20	chr3:59757000-59758400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:59757000-59758400	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr3:59757000-59758400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:59757000-59758600	Enhancers	Placenta Amnion	Placenta Amnion
24	chr3:59757000-59759600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:59757200-59758000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:59757200-59758000	Enhancers	HSMMtube	muscle
27	chr3:59757200-59758000	Enhancers	NHEK	skin
28	chr3:59757200-59758400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr3:59757200-59758400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr3:59757200-59758400	Enhancers	A549	lung
31	chr3:59757200-59758600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:59757200-59758800	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr3:59757200-59759000	Enhancers	NH-A	brain
34	chr3:59757200-59760000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr3:59757200-59760200	Enhancers	Primary T cells fromperipheralblood	blood
36	chr3:59757200-59761200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:59757400-59758400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr3:59757400-59758600	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr3:59757400-59758800	Enhancers	Fetal Kidney	kidney
40	chr3:59757400-59760000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr3:59757600-59758000	Enhancers	Small Intestine	intestine
42	chr3:59757600-59758400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr3:59757600-59758400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr3:59757600-59758600	Enhancers	HSMM	muscle
45	chr3:59757600-59759600	Enhancers	Primary B cells from peripheral blood	blood
46	chr3:59757800-59758400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr3:59757800-59758400	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr3:59757800-59758800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr3:59757800-59759000	Flanking Active TSS	Thymus	Thymus
50	chr3:59757800-59762200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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