Variant report

Variant	rs1729753
Chromosome Location	chr13:95732149-95732150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1189430	0.83[EUR][1000 genomes]
rs1189431	0.83[EUR][1000 genomes]
rs1189433	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1189434	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1189435	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1189436	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1189437	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1189438	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1189439	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1189440	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1189456	0.92[EUR][1000 genomes]
rs1189461	0.92[EUR][1000 genomes]
rs1189462	0.92[EUR][1000 genomes]
rs1189463	0.85[EUR][1000 genomes]
rs1189464	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1189466	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1189467	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1612388	0.83[ASN][1000 genomes]
rs1617888	0.83[AFR][1000 genomes]
rs1629441	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1630901	0.83[ASN][1000 genomes]
rs1678339	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1678347	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1678351	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1678353	0.83[EUR][1000 genomes]
rs1678362	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1678365	0.92[EUR][1000 genomes]
rs1678387	0.92[EUR][1000 genomes]
rs1678409	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1729745	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1729747	0.82[ASN][1000 genomes]
rs1729752	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1729755	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1729773	0.83[EUR][1000 genomes]
rs1751031	0.83[ASN][1000 genomes]
rs1751034	0.82[ASN][1000 genomes]
rs1751036	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1751037	0.92[EUR][1000 genomes]
rs1751042	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1751043	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1751046	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1751052	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1751055	0.83[EUR][1000 genomes]
rs1751056	0.82[EUR][1000 genomes]
rs1751057	0.83[EUR][1000 genomes]
rs2619308	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2766475	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2766479	0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2950957	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7986666	1.00[ASN][1000 genomes]
rs7987858	0.91[ASN][1000 genomes]
rs7988310	0.92[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs931111	0.82[ASN][1000 genomes]
rs943289	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv525194	chr13:95672950-95737192	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95669600-95744000	Weak transcription	Small Intestine	intestine
2	chr13:95676000-95740000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:95683200-95751800	Weak transcription	Fetal Lung	lung
4	chr13:95685200-95734600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr13:95686800-95744600	Weak transcription	Esophagus	oesophagus
6	chr13:95692800-95735800	Weak transcription	NHEK	skin
7	chr13:95702400-95735200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr13:95710400-95741200	Weak transcription	Right Ventricle	heart
9	chr13:95718000-95741800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr13:95719600-95739800	Weak transcription	Pancreas	Pancrea
11	chr13:95720000-95735400	Weak transcription	HUVEC	blood vessel
12	chr13:95720000-95736200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr13:95720600-95735000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr13:95720600-95736600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr13:95720800-95734200	Weak transcription	Thymus	Thymus
16	chr13:95723000-95742200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:95723200-95733000	Weak transcription	Aorta	Aorta
18	chr13:95723800-95733000	Weak transcription	Fetal Intestine Small	intestine
19	chr13:95723800-95733000	Weak transcription	Fetal Stomach	stomach
20	chr13:95723800-95760000	Weak transcription	Colon Smooth Muscle	Colon
21	chr13:95724000-95740000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr13:95724000-95751800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr13:95724000-95760600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr13:95724200-95732400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr13:95724200-95733000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr13:95724200-95734600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr13:95724200-95734800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr13:95724200-95740000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr13:95724200-95749600	Weak transcription	Fetal Intestine Large	intestine
30	chr13:95726400-95733800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr13:95726400-95739800	Weak transcription	NH-A	brain
32	chr13:95727000-95739800	Weak transcription	NHLF	lung
33	chr13:95727000-95752600	Weak transcription	HSMM	muscle
34	chr13:95727000-95791600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr13:95727000-95812000	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr13:95727200-95735000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr13:95727200-95740000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr13:95727400-95736000	Weak transcription	NHDF-Ad	bronchial
39	chr13:95727600-95732600	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr13:95727600-95733600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr13:95727600-95761000	Weak transcription	K562	blood
42	chr13:95727800-95732600	Weak transcription	A549	lung
43	chr13:95727800-95733400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr13:95727800-95744200	Weak transcription	Spleen	Spleen
45	chr13:95727800-95767800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr13:95728000-95733000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr13:95728000-95733200	Weak transcription	Duodenum Mucosa	Duodenum
48	chr13:95728400-95778800	Weak transcription	Ovary	ovary
49	chr13:95728600-95733400	Weak transcription	Lung	lung
50	chr13:95728600-95744200	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links