Variant report

Variant	rs1751056
Chromosome Location	chr13:95745839-95745840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1189430	0.98[EUR][1000 genomes]
rs1189431	0.98[EUR][1000 genomes]
rs1189432	0.82[EUR][1000 genomes]
rs1189433	0.87[EUR][1000 genomes]
rs1189434	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1189435	0.87[EUR][1000 genomes]
rs1189436	0.87[EUR][1000 genomes]
rs1189437	0.82[EUR][1000 genomes]
rs1189438	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1189439	0.83[EUR][1000 genomes]
rs1189440	0.85[EUR][1000 genomes]
rs1189456	0.85[EUR][1000 genomes]
rs1189461	0.85[EUR][1000 genomes]
rs1189462	0.85[EUR][1000 genomes]
rs1189463	0.82[EUR][1000 genomes]
rs1189464	0.85[EUR][1000 genomes]
rs1189466	0.85[EUR][1000 genomes]
rs1189467	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1629441	0.81[EUR][1000 genomes]
rs1678339	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1678341	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1678347	0.80[EUR][1000 genomes]
rs1678351	0.85[EUR][1000 genomes]
rs1678353	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1678362	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1678365	0.85[EUR][1000 genomes]
rs1678387	0.85[EUR][1000 genomes]
rs1678395	0.82[EUR][1000 genomes]
rs1678409	0.85[EUR][1000 genomes]
rs1729752	0.83[EUR][1000 genomes]
rs1729753	0.82[EUR][1000 genomes]
rs1729755	0.81[EUR][1000 genomes]
rs1729773	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1751036	0.85[EUR][1000 genomes]
rs1751037	0.85[EUR][1000 genomes]
rs1751042	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1751043	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1751046	0.81[EUR][1000 genomes]
rs1751052	0.81[ASN][1000 genomes]
rs1751055	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1751057	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1751060	0.82[EUR][1000 genomes]
rs2619308	0.83[EUR][1000 genomes]
rs2766475	0.81[EUR][1000 genomes]
rs2950957	0.81[EUR][1000 genomes]
rs4773840	0.80[ASN][1000 genomes]
rs943289	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95683200-95751800	Weak transcription	Fetal Lung	lung
2	chr13:95723800-95760000	Weak transcription	Colon Smooth Muscle	Colon
3	chr13:95724000-95751800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr13:95724000-95760600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr13:95724200-95749600	Weak transcription	Fetal Intestine Large	intestine
6	chr13:95727000-95752600	Weak transcription	HSMM	muscle
7	chr13:95727000-95791600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr13:95727000-95812000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr13:95727600-95761000	Weak transcription	K562	blood
10	chr13:95727800-95767800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr13:95728400-95778800	Weak transcription	Ovary	ovary
12	chr13:95728600-95776000	Weak transcription	Gastric	stomach
13	chr13:95731200-95791600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr13:95731600-95756000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr13:95731600-95756600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr13:95732800-95751800	Weak transcription	Primary T cells from cord blood	blood
17	chr13:95733600-95750000	Weak transcription	Lung	lung
18	chr13:95733800-95750000	Weak transcription	Fetal Intestine Small	intestine
19	chr13:95733800-95751600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr13:95740400-95752200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr13:95740400-95753000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr13:95740400-95756600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr13:95740600-95748400	Weak transcription	GM12878-XiMat	blood
24	chr13:95740600-95752800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr13:95740600-95772200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr13:95740800-95791200	Weak transcription	NHLF	lung
27	chr13:95741000-95756800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr13:95741400-95763400	Weak transcription	Left Ventricle	heart
29	chr13:95741600-95772600	Weak transcription	Primary hematopoietic stem cells	blood
30	chr13:95741800-95751200	Weak transcription	HUVEC	blood vessel
31	chr13:95742600-95750200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr13:95742800-95747400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr13:95742800-95748000	Weak transcription	A549	lung
34	chr13:95742800-95755200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr13:95744200-95765200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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