Variant report

Variant	rs4773840
Chromosome Location	chr13:95770425-95770426
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:95757108..95759848-chr13:95767830..95770575,2	K562	blood:
2	chr13:95768958..95770607-chr13:95772678..95774222,2	MCF-7	breast:
3	chr13:95762797..95765329-chr13:95769234..95770781,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1189430	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1189431	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1189432	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1189434	0.89[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap]
rs1189435	0.83[CHD][hapmap];1.00[MEX][hapmap]
rs1189436	0.83[CHD][hapmap];1.00[MEX][hapmap]
rs1189437	0.83[CHD][hapmap]
rs1189438	0.89[CHD][hapmap];0.80[JPT][hapmap]
rs1189439	0.83[CHD][hapmap]
rs1189451	0.93[CHD][hapmap];0.85[JPT][hapmap]
rs1189452	0.93[CHD][hapmap];0.85[JPT][hapmap]
rs1189461	0.93[CHD][hapmap];0.85[JPT][hapmap]
rs1189462	0.93[CHD][hapmap];0.85[JPT][hapmap]
rs1189466	0.93[CHD][hapmap];0.85[JPT][hapmap]
rs1612388	0.86[CHD][hapmap]
rs1630901	0.86[CHD][hapmap]
rs1678339	0.93[CHD][hapmap];0.85[JPT][hapmap]
rs1678340	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1678341	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1678351	0.86[CHD][hapmap];0.85[JPT][hapmap]
rs1678353	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1678362	0.89[CHD][hapmap];0.80[JPT][hapmap]
rs1678365	0.93[CHD][hapmap];0.85[JPT][hapmap]
rs1678387	0.93[CHD][hapmap];0.85[JPT][hapmap]
rs1678395	1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1678409	0.86[CHD][hapmap]
rs1729745	0.86[CHD][hapmap]
rs1729773	1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1751031	0.86[CHD][hapmap]
rs1751033	0.86[CHD][hapmap]
rs1751036	0.86[CHD][hapmap]
rs1751037	0.93[CHD][hapmap];0.85[JPT][hapmap]
rs1751042	0.85[JPT][hapmap]
rs1751043	0.93[CHD][hapmap];0.85[JPT][hapmap]
rs1751052	0.89[CHD][hapmap];0.80[JPT][hapmap]
rs1751055	1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1751056	0.80[ASN][1000 genomes]
rs1751057	0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1751060	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1751061	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2619311	0.85[JPT][hapmap]
rs2619312	0.93[CHD][hapmap];0.85[JPT][hapmap]
rs2766475	0.83[CHD][hapmap]
rs2950957	0.86[CHD][hapmap]
rs931111	0.86[CHD][hapmap]
rs943289	0.86[CHD][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95727000-95791600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:95727000-95812000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr13:95728400-95778800	Weak transcription	Ovary	ovary
4	chr13:95728600-95776000	Weak transcription	Gastric	stomach
5	chr13:95731200-95791600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr13:95740600-95772200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr13:95740800-95791200	Weak transcription	NHLF	lung
8	chr13:95741600-95772600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr13:95750400-95812400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr13:95750400-95815400	Weak transcription	Fetal Intestine Large	intestine
11	chr13:95751000-95793400	Weak transcription	Fetal Kidney	kidney
12	chr13:95751400-95777600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr13:95751600-95795600	Weak transcription	Small Intestine	intestine
14	chr13:95752000-95789000	Weak transcription	Aorta	Aorta
15	chr13:95752200-95823200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr13:95752200-95844200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr13:95753400-95775400	Weak transcription	HSMMtube	muscle
18	chr13:95753600-95772600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:95754000-95777200	Weak transcription	NHDF-Ad	bronchial
20	chr13:95754000-95794800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr13:95754400-95782600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr13:95755000-95774200	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr13:95755400-95776400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr13:95756400-95828200	Weak transcription	HSMM	muscle
25	chr13:95757600-95772800	Weak transcription	Lung	lung
26	chr13:95757600-95814400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr13:95758000-95791600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr13:95758200-95774000	Weak transcription	Primary T cells from cord blood	blood
29	chr13:95758400-95772800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr13:95761400-95789200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr13:95761600-95774000	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr13:95762200-95817200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr13:95762400-95774000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr13:95762400-95811800	Weak transcription	K562	blood
35	chr13:95763000-95774000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr13:95765600-95777400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr13:95767600-95776000	Weak transcription	Pancreas	Pancrea
38	chr13:95767600-95779800	Weak transcription	Fetal Lung	lung
39	chr13:95768000-95770800	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr13:95768200-95774000	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr13:95768200-95774000	Weak transcription	GM12878-XiMat	blood
42	chr13:95768200-95783400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr13:95768200-95806600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr13:95768200-95819000	Weak transcription	Fetal Intestine Small	intestine
45	chr13:95768400-95771000	Weak transcription	Osteobl	bone
46	chr13:95768600-95772000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr13:95768800-95770600	Enhancers	Stomach Mucosa	stomach
48	chr13:95769000-95789400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr13:95769200-95771000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr13:95769200-95774800	Weak transcription	Left Ventricle	heart

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