Variant report

Variant	rs17297619
Chromosome Location	chr4:175524508-175524509
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10520288	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13134495	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2555669	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35196533	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35968702	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6818501	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6819540	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826752	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6834388	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6852255	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7660757	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7662981	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1018390	chr4:175475505-175969742	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv880403	chr4:175485318-175535392	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv880679	chr4:175502088-175552622	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv880584	chr4:175505749-175644689	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv880497	chr4:175513812-175556222	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175520400-175524800	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:175522000-175525000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr4:175522000-175525400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:175522000-175527800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:175522400-175525600	Weak transcription	Stomach Mucosa	stomach
6	chr4:175522400-175527600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:175523600-175525000	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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